Re: [galaxy-dev] Attempting to bind to AMQP message queue, but kombu dependency unavailable
That should be fixed now, sorry about that.
-John
On Tue, Feb 18, 2014 at 6:07 AM, Peter Cock wrote:
> On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock
> wrote:
>>
>> Hi all,
>>
>> I just updated my development server, and ran into what looks
>> like a missing dependency:
>>
>> $ ./run.sh
>> ...
>> galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler
>> galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all
>> configured runner plugins
>> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner
>> workers
>> galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner
>> 'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
>> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner
>> workers
>> Traceback (most recent call last):
>> File "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py",
>> line 39, in app_factory
>> app = UniverseApplication( global_conf = global_conf, **kwargs )
>> File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in
>> __init__
>> self.job_manager = manager.JobManager( self )
>> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31,
>> in __init__
>> self.job_handler = handler.JobHandler( app )
>> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31,
>> in __init__
>> self.dispatcher = DefaultJobDispatcher( app )
>> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576,
>> in __init__
>> self.job_runners = self.app.job_config.get_job_runner_plugins(
>> self.app.config.server_name )
>> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496,
>> in get_job_runner_plugins
>> rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get(
>> 'kwds', {} ) )
>> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line
>> 45, in __init__
>> self.client_manager = build_client_manager(**client_manager_kwargs)
>> File
>> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
>> line 41, in build_client_manager
>> return MessageQueueClientManager(**kwargs)
>> File
>> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
>> line 89, in __init__
>> self.exchange = LwrExchange(self.url, self.manager_name)
>> File
>> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py",
>> line 37, in __init__
>> raise Exception(KOMBU_UNAVAILABLE)
>> Exception: Attempting to bind to AMQP message queue, but kombu dependency
>> unavailable
>>
>>
>> $ hg summary
>> parent: 13557:75b13d642f94 tip
>> Allow LWR runner to publish/consume messages via message queue.
>> branch: default
>> commit: 9 modified, 240 unknown
>> update: (current)
>>
>> (Local modifications mostly extra logging lines; nothing which
>> looked relevant here)
>>
>> Regards,
>>
>> Peter
>
>
>
> Also (not unexpectedly) breaking my TravisCI tool tests, e.g.
> https://travis-ci.org/peterjc/pico_galaxy/builds/19101036
>
> Peter
>
>
> ___
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Re: [galaxy-dev] Attempting to bind to AMQP message queue, but kombu dependency unavailable
Hi John,
Fix confirmed - nice timing, I just finished my lunch break :)
Thanks!
Peter
On Tue, Feb 18, 2014 at 12:35 PM, John Chilton wrote:
> That should be fixed now, sorry about that.
>
> -John
>
> On Tue, Feb 18, 2014 at 6:07 AM, Peter Cock
> wrote:
> > On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock
> > wrote:
> >>
> >> Hi all,
> >>
> >> I just updated my development server, and ran into what looks
> >> like a missing dependency:
> >>
> >> $ ./run.sh
> >> ...
> >> galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler
> >> galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all
> >> configured runner plugins
> >> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner
> >> workers
> >> galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner
> >> 'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
> >> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner
> >> workers
> >> Traceback (most recent call last):
> >> File
> "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py",
> >> line 39, in app_factory
> >> app = UniverseApplication( global_conf = global_conf, **kwargs )
> >> File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in
> >> __init__
> >> self.job_manager = manager.JobManager( self )
> >> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31,
> >> in __init__
> >> self.job_handler = handler.JobHandler( app )
> >> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31,
> >> in __init__
> >> self.dispatcher = DefaultJobDispatcher( app )
> >> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line
> 576,
> >> in __init__
> >> self.job_runners = self.app.job_config.get_job_runner_plugins(
> >> self.app.config.server_name )
> >> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line
> 496,
> >> in get_job_runner_plugins
> >> rval[id] = runner_class( self.app, runner[ 'workers' ],
> **runner.get(
> >> 'kwds', {} ) )
> >> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line
> >> 45, in __init__
> >> self.client_manager = build_client_manager(**client_manager_kwargs)
> >> File
> >>
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
> >> line 41, in build_client_manager
> >> return MessageQueueClientManager(**kwargs)
> >> File
> >>
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
> >> line 89, in __init__
> >> self.exchange = LwrExchange(self.url, self.manager_name)
> >> File
> >>
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py",
> >> line 37, in __init__
> >> raise Exception(KOMBU_UNAVAILABLE)
> >> Exception: Attempting to bind to AMQP message queue, but kombu
> dependency
> >> unavailable
> >>
> >>
> >> $ hg summary
> >> parent: 13557:75b13d642f94 tip
> >> Allow LWR runner to publish/consume messages via message queue.
> >> branch: default
> >> commit: 9 modified, 240 unknown
> >> update: (current)
> >>
> >> (Local modifications mostly extra logging lines; nothing which
> >> looked relevant here)
> >>
> >> Regards,
> >>
> >> Peter
> >
> >
> >
> > Also (not unexpectedly) breaking my TravisCI tool tests, e.g.
> > https://travis-ci.org/peterjc/pico_galaxy/builds/19101036
> >
> > Peter
> >
> >
> > ___
> > Please keep all replies on the list by using "reply all"
> > in your mail client. To manage your subscriptions to this
> > and other Galaxy lists, please use the interface at:
> > http://lists.bx.psu.edu/
> >
> > To search Galaxy mailing lists use the unified search at:
> > http://galaxyproject.org/search/mailinglists/
>
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Re: [galaxy-dev] Attempting to bind to AMQP message queue, but kombu dependency unavailable
On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock wrote:
> Hi all,
>
> I just updated my development server, and ran into what looks
> like a missing dependency:
>
> $ ./run.sh
> ...
> galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler
> galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all
> configured runner plugins
> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner
> workers
> galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner
> 'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner
> workers
> Traceback (most recent call last):
> File "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py",
> line 39, in app_factory
> app = UniverseApplication( global_conf = global_conf, **kwargs )
> File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in
> __init__
> self.job_manager = manager.JobManager( self )
> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31,
> in __init__
> self.job_handler = handler.JobHandler( app )
> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31,
> in __init__
> self.dispatcher = DefaultJobDispatcher( app )
> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576,
> in __init__
> self.job_runners = self.app.job_config.get_job_runner_plugins(
> self.app.config.server_name )
> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496,
> in get_job_runner_plugins
> rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get(
> 'kwds', {} ) )
> File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line
> 45, in __init__
> self.client_manager = build_client_manager(**client_manager_kwargs)
> File
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
> line 41, in build_client_manager
> return MessageQueueClientManager(**kwargs)
> File
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
> line 89, in __init__
> self.exchange = LwrExchange(self.url, self.manager_name)
> File
> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py",
> line 37, in __init__
> raise Exception(KOMBU_UNAVAILABLE)
> Exception: Attempting to bind to AMQP message queue, but kombu dependency
> unavailable
>
>
> $ hg summary
> parent: 13557:75b13d642f94 tip
> Allow LWR runner to publish/consume messages via message queue.
> branch: default
> commit: 9 modified, 240 unknown
> update: (current)
>
> (Local modifications mostly extra logging lines; nothing which
> looked relevant here)
>
> Regards,
>
> Peter
>
Also (not unexpectedly) breaking my TravisCI tool tests, e.g.
https://travis-ci.org/peterjc/pico_galaxy/builds/19101036
Peter
___
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
