Re: [galaxy-dev] Jobs stay queued

2014-07-28 Thread julie dubois
Hi Hans-Rudolf. Yes, I have this error in my log file :"MySQL server has gone away"!!! So I changed the option database_engine_option_pool and it seems to work fine! Thanks a lot for your help. And for the information, when a job is queued on a local instance not in a cluster, when we restart th

Re: [galaxy-dev] Jobs stay queued

2014-07-23 Thread Hans-Rudolf Hotz
On 07/23/2014 02:13 PM, julie dubois wrote: I'm using a MySQL database !!! But may be such database-lock can appear because of my universe.ini configuration file. Here it's the lines concerning the database : database_engine_option_pool_size = 10 database_engine_option_max_overflow = 20 databa

Re: [galaxy-dev] Jobs stay queued

2014-07-23 Thread julie dubois
I'm using a MySQL database !!! But may be such database-lock can appear because of my universe.ini configuration file. Here it's the lines concerning the database : database_engine_option_pool_size = 10 database_engine_option_max_overflow = 20 database_engine_option_pool_recycle = -1 database_engi

Re: [galaxy-dev] Jobs stay queued

2014-07-23 Thread Hans-Rudolf Hotz
On 07/23/2014 12:05 PM, julie dubois wrote: Hi Hans-Rudolf, Thanks for your answer. I've launched lot of jobs since monday. And some jobs were finished and some jobs never started. In "Manage jobs" I can see jobs queued because they need inputs which are queued, so I think it's normal. But oth

Re: [galaxy-dev] Jobs stay queued

2014-07-23 Thread julie dubois
Hi Hans-Rudolf, Thanks for your answer. I've launched lot of jobs since monday. And some jobs were finished and some jobs never started. In "Manage jobs" I can see jobs queued because they need inputs which are queued, so I think it's normal. But other jobs are described like this : 9554 user_l

Re: [galaxy-dev] Jobs stay queued

2014-07-23 Thread Hans-Rudolf Hotz
Hi Julie Are there any jobs running at all? What do you get when you click on "Manage jobs" in the admin menu? Maybe you have some old jobs 'running' which are now blocking your queue? Hans-Rudolf On 07/23/2014 11:14 AM, julie dubois wrote: Hi all, I've seen several posts for jobs which

Re: [galaxy-dev] Jobs stay queued

2014-07-23 Thread Thomas Bellembois
On 23/07/2014 11:14, julie dubois wrote: > Hi all, > I've seen several posts for jobs which stay queued and never start > with an installation of galaxy on a cluster. > But our installation is just a local instance of galaxy in 1 PC and I > have more than 100 jobs which stay queued and never start.