Re: [galaxy-dev] TestToolShed failure, Exception: History in error state.

2014-08-01 Thread John Chilton
On Thu, Jul 31, 2014 at 12:29 PM, Peter Cock wrote: > On Thu, Jul 31, 2014 at 5:21 PM, bjoern.gruen...@googlemail.com > wrote: >> Hi Peter, >> >> >> 2014-07-31 10:57 GMT+02:00 Peter Cock : >> >>> Hi Dave, >>> >>> You are right that on closer inspection I've mixed tool_dependencies.xml >>> and rep

Re: [galaxy-dev] TestToolShed failure, Exception: History in error state.

2014-07-31 Thread Peter Cock
On Thu, Jul 31, 2014 at 5:21 PM, bjoern.gruen...@googlemail.com wrote: > Hi Peter, > > > 2014-07-31 10:57 GMT+02:00 Peter Cock : > >> Hi Dave, >> >> You are right that on closer inspection I've mixed tool_dependencies.xml >> and repository_dependencies.xml *again*. Evidentially my mental model >>

Re: [galaxy-dev] TestToolShed failure, Exception: History in error state.

2014-07-31 Thread bjoern.gruen...@googlemail.com
Hi Peter, 2014-07-31 10:57 GMT+02:00 Peter Cock : > Hi Dave, > > You are right that on closer inspection I've mixed tool_dependencies.xml > and repository_dependencies.xml *again*. Evidentially my mental model > does not match Greg's here: > > (*) I need to define a tool installation recipe for

Re: [galaxy-dev] TestToolShed failure, Exception: History in error state.

2014-07-31 Thread Peter Cock
Hi Dave, You are right that on closer inspection I've mixed tool_dependencies.xml and repository_dependencies.xml *again*. Evidentially my mental model does not match Greg's here: (*) I need to define a tool installation recipe for something not in the Tool Shed --> write an install script called

Re: [galaxy-dev] TestToolShed failure, Exception: History in error state.

2014-07-30 Thread Dave Bouvier
Peter, I believe part of the problem is that the install and test framework is unable to resolve the dependency on blast+ 2.2.29 because it is defined as a repository dependency, not a tool dependency. I would recommend replacing the repository dependency in the blast_rbh repository with a too