Hello thank you for your reply.
I followed the instructions on your blog together with the Galaxy tutorial and
even though I changed the port to 127.0.0.1:8091 in supervisord.conf it refuses
the connection:
supervisorctl status
http://localhost:9001 refused connection
T
Dear Galaxy Team,
I am trying to create my own visualization for a unique datatype but I cannot
get past this error in the load. Where is the ID tag assigned for my
visualization?
Thanks
Bob
galaxy.datatypes.registry ERROR 2015-12-10 15:10:13,440 Error loading display
application
(/home/HM_
Hey Brad,
What version of Galaxy are you on? Parameterized macros are pretty
new and will not work on older Galaxies.
-John
On Fri, Dec 4, 2015 at 3:36 AM, Langhorst, Brad wrote:
> Hi:
> I just installed hisat2 and the data manager from the toolshed ….
>
> Some macros seem not to be expanded
Despite sounding very similar, visualizations and display applications
are different things - display applications for the most part send or
expose Galaxy data to outside sources, visualizations run on the
Galaxy server and the client side.
It seems like you are trying to configure a visualization
Yeah - those wrappers are not going to work with 15.05. Parameterized
XML macros were added in 15.07 it looks like
(http://galaxy.readthedocs.org/en/master/releases/15.07_announce.html).
-John
On Thu, Dec 10, 2015 at 10:28 PM, Langhorst, Brad wrote:
> Hi:
>
> I’m at release_15.05
>
> Some of thi
Indeed, Galaxy does need that for sure. Eric has created an issue and
I think Dan has some work in progress.
https://github.com/galaxyproject/galaxy/issues/1188
-John
On Thu, Dec 10, 2015 at 10:37 PM, Langhorst, Brad wrote:
> Hi John:
>
> I wonder if galaxy tools need a minimum galaxy version f
15.10 does checking that the job script written can be executed before
the job is submitted and some file system syncing that really may help
this issue. Hopefully this helps this particular case, in general
though Galaxy does need to be better about resuming workflows over
collections and retrying
Jack,
Yes I want to view internal to Galaxy's middle pane like the eyeball does.
Do data both visualization and display applications use the icon at the bottom
left of the History?
So with display applications one does not need an ID tag?
Thanks
Bob
- Original Message -From: John Chil
