be really useful. Are you planning to extend your
development to accommodate this need in the near future? Or if there is already
a way to do this that I don't see, please let me know.
Cheers,
Oksana
> On Aug 1, 2015, at 1:10 PM, Björn Grüning wrote:
>
> Hi Oksana,
>
>
Galaxy! Will try to contribute once I get more
up-to-speed.
Cheers,
Oksana
> On Aug 2, 2015, at 4:23 AM, Björn Grüning wrote:
>
> Hi,
>
> I will think about this, but this comes with the price of doing much of
> the internal stuff during startup, which also have it's down
like to extend the
galaxy-stable Docker image, and not change the existing one. Currently, I
don't see any other way but to fork
https://github.com/bgruening/docker-galaxy-stable and change the Dockerfile
to externalize those (and other) variables. I hope I can get b
your lightweight way
as a default, but allow to change it for those who need it. That said, I
would welcome any standardized solution, be it run time or build time.
Cheers,
Oksana
On Wed, Aug 5, 2015 at 4:30 AM, Björn Grüning
wrote:
> Hi Brian,
>
> thanks for you mail! Very appreciated,
Created issue #74, with reference to this discussion.
Cheers,
Oksana
On Wed, Aug 5, 2015 at 9:52 AM, Björn Grüning
wrote:
> Hi Brian, Oksana,
>
> let's move this discussion to github and try to get something done for
> the next+1 release.
>
> 15.07/15.08 or what ever it
can fix it. Any
feedback, including your own stories for visualization setup or how I can
debug what's not being picked up where, would be greatly appreciated.
Cheers,
Oksana
--
::
Oksana Korol
dataquarry.blogspot.ca
___
Please keep al
s of what
could have gone wrong with the visualization.
Cheers,
Oksana
Message: 1
> Date: Sat, 23 Jan 2016 19:55:47 +0100
> From: Björn Grüning
> To: Oksana Korol ,
> galaxy-dev@lists.galaxyproject.org
> Subject: Re: [galaxy-dev] Setting up visualization on Galaxy on CentO
It's un-commented in both local and production. Still there is no icon in
production.
Cheers,
Oksana
On Mon, Jan 25, 2016 at 9:52 AM, Björn Grüning
wrote:
> Hi,
>
> can you please check this setting?
>
>
> https://github.com/galaxyproject/galaxy/blob/dev/config
. Upload it, selecting nhx as a datatype. Double-check the
datatype by clicking on a pencil icon - it's nhx on both, but it works on
local and doesn't on production.
I'll keep digging and comparing the two installs. If you think of anythin
Thanks for the detailed breakdown of the places to check, Carl! I was able
to fix the issue following the steps you've outlined. For the benefit of
other readers, here is what I did to fix it:
On Tue, Jan 26, 2016 at 10:09 AM, Carl Eberhard
wrote:
> Hi, Oksana
>
> There are a few
Hi,
Who is the administrator on Galaxy Main Toolshed (
https://toolshed.g2.bx.psu.edu)? I'm trying to re-set a password for the
work Galaxy toolshed account, but I think that the email is blocked by our
firewall. Who can I contact to resolve this issue?
Thanks!
Oksana
blocked by our
firewall. Who can I contact to resolve this issue?
Thanks!
--
::
Oksana Korol
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Please keep all replies on the list by using "reply all"
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and other Galaxy l
package the tools depend on (
package_python_2_7_qiime_1_9_1) is already available on main toolshed. What
is the plan for making the wrappers, that depend on this package, available
on main toolshed as well?
Thanks a bunch!
--
::
Oksana Korol
Hey Bjoern,
I've just started learning qiime, so probably not the best person to write
tests / do clean up at the moment. Galaxy tool would have made my life much
easier, by way of figuring out this beast :).
Oksana
Hi Oksana,
>
> afaik a few more tests would be nice:
>
> h
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