[galaxy-dev] server datacache.g2.bx.psu.edu unreachable

following : /*En essayant d'accéder à l'URL http://datacache.g2.bx.psu.edu/ l'erreur suivante a été rencontrée :*/ /*La connexion 128.118.250.10 a échouée.*/ /*Le système a retourné : *//*(111) Connection refused */ / /Thanks in advance for your help, Sarah Maman --

Re: [galaxy-dev] server datacache.g2.bx.psu.edu unreachable

, Sarah Nate Coraor a écrit : Hi Sarah, The connection to datacache should be made over rsync. Please (e.g. `rsync rsync://datacache.galaxyproject.org <http://datacache.galaxyproject.org>` on the command line). Does this work for you? --nate On Thu, Dec 4, 2014 at 8:56 AM, Sarah

Re: [galaxy-dev] [gtgalaxy] server datacache.g2.bx.psu.edu unreachable

Thanks a lot, Nate. I test and I'll let you know. Sarah Nate Coraor a écrit : On Fri, Dec 12, 2014 at 4:34 AM, Sarah Maman <mailto:sma...@toulouse.inra.fr>> wrote: Hello Nate, We have test rsync command from another institut and we obtain the same error message.

Re: [galaxy-dev] server datacache.g2.bx.psu.edu unreachable

command line). Does this work for you?   --nate On Thu, Dec 4, 2014 at 8:56 AM, Sarah Maman wrote: _Hello, The server datacache.g2.bx.psu.edu[2] isn't reachable since 2/3 days, so we can't access to banks provided by Galaxy Project (https://wiki.galaxyproject.org/Admin/UseG

Re: [galaxy-dev] server datacache.g2.bx.psu.edu unreachable

Hi Nate, rsync command is now reachable. Thanks a lot, Sarah Nate Coraor a écrit : On Fri, Dec 12, 2014 at 4:34 AM, Sarah Maman <mailto:sma...@toulouse.inra.fr>> wrote: Hello Nate, We have test rsync command from another institut and we obtain the same erro

[galaxy-dev] "Variant Annotator" reference genome

ple file distributed with Galaxy... oviAri1 oviAri1 Ovis:oviAri1 /bank/Galaxy/oviAri1/current/flat/picard_index/oviAri1.dict ls /bank/Galaxy/oviAri1/current/flat/picard_index/ oviAri1.dict oviAri1.fa oviAri1.fa.fai Could you please tell me where does my mistake ? Kind regards, Sarah Maman

[galaxy-dev] It 's possible to purge deleted datasets with last galaxy code ?

hidde these datasets ? Thanks in advance, Sarah Maman -- Sarah Maman INRA - GenPhySE - SIGENAE Chemin de Borde-Rouge - Auzeville - BP 52627 31326 Castanet-Tolosan cedex - FRANCE Tel: +33(0)5.61.28.57.08 Fax: +33(0)5.61.28.57.53 ___ Please

[galaxy-dev] Search box in tools menu / uncomplete wrappers list

n the tool name and/or the tool description. Could you please help us to understand why ? Thanks, Sarah Maman _____ Sarah Maman Bioinformatique/Bioinformatics INRA | SIGENAE | GenPhySE Centre Inra Occitanie-Toulouse Tél. : +33(0)5.6

Re: [galaxy-dev] Search box in tools menu / uncomplete wrappers list

Hello Martin, Thanks a lot. I increased tool_search_limit to 25 (20 by default) in galaxy.ini file and my toolpanel search is now well configurated. Have a nice day, Sarah _ Sarah Maman Bioinformatique/Bioinformatics INRA | SIGENAE | GenPhySE Centre Inra

[galaxy-dev] Question on RNA STAR Revision: 13:850f3679b9b4

ectory/000/282/282124/tool_script.sh: line 9: 48744 Aborted (core dumped) STAR --runThreadN ${GALAXY_SLOTS:-4}... Even if I increase the number of genome bins for coordinate-sorting, output files are all empty and I read this stderr above. Thanks in advance, Sarah Maman INRA

[galaxy-dev] Re: Question on RNA STAR Revision: 13:850f3679b9b4

-Toulouse Tél. : +33(0)5.61.28.57.08 Télétravail lundi / vendredi De : Björn Grüning Envoyé : lundi 25 novembre 2019 22:50 À : Sarah Maman; galaxy-dev@lists.galaxyproject.org Objet : Re: [galaxy-dev] Question on RNA STAR Revision: 13:850f3679b9b4 Hi Sarah