Hi Jennifer,
I had some uploads that were probably stuck and going on for 5-7 days. I
deleted them and uploaded 2 new files for upload. can you please check and
see if the upload is happening normally for these files? Thanks a lot for
your help and patience
thanks,
fatih
On Wed, Jun 20, 2012 at
Hi Greg,
Upload your files to a Galaxy data library using a combination of Upload files
from filesystem paths without copying data into Galaxy's default data store.
See the following wiki for all the details:
http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Library%20Files
For all
Thank you very much for your help with this - we got that settled. One
other question...we are importing sorted, indexed bam files into a galaxy
data library and we are not having galaxy copy over the files (they are
large) but rather just setting up galaxy such that it points to the
relevant
Hi Greg,
Even though you are not copying the data into Galaxy's default data store,
Galaxy determines and stores certain metadata for each of the data files to
which you are linking. One of the types of metadata defined for the Bam
datatypes is it's index, which is created by a call to
Thanks again for the feedback...one final (hopefully) thingas I
mentioned in first e-mail, we are trying to add a large (~170 GB) BAM
file to a library with just a link to the file (no copying). After at
least an hour of working, I get the error message Unable to finish
job,
tool error. Any
Is there something helpful in your paster log about the cause?
On Apr 23, 2012, at 4:34 PM, Gregory Miles wrote:
Thanks again for the feedback...one final (hopefully) thingas I
mentioned in first e-mail, we are trying to add a large (~170 GB) BAM
file to a library with just a link to the
Dear galaxy UsersI am very very new to galaxy, will be highly
obliged if some one could help me to find the way to analyse bacterial
tramnscriptome. in the first step itself , i am having trouble to
upload files...Does any one knows how to generate URL to upload data, my fastq files are about 3 gb
Ateeq,
The preferred method for uploading large files (that aren't already hosted
somewhere) is FTP. See the instructions here:
http://wiki.g2.bx.psu.edu/Learn/Upload%20via%20FTP
We don't generally provide specific analysis pipelines, rather the tools for
composing them, though you're
Hi, I am new to Galaxy and trying to upload some data files. The size
of my compressed file is about 7 GB, how long it will take to upload one
file?
Thank you.
Haiping
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JHMI Deep Sequencing and Microarray Core Facility at BRB
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