Thank you!
Uma Chandran
From: Ian Donaldson [mailto:ian.donald...@manchester.ac.uk]
Sent: Wednesday, March 12, 2014 5:04 AM
To: Chandran, Uma; galaxy-user@lists.bx.psu.edu
Subject: RE: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except
csfasta/qual data?
Hi Uma,
If you look under 'NGS
From: galaxy-user-boun...@lists.bx.psu.edu
[galaxy-user-boun...@lists.bx.psu.edu] on behalf of Chandran, Uma
[chandra...@upmc.edu]
Sent: 11 March 2014 13:14
To: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except
csfasta/qual data
Are there mappers for SoLiD 5500 on Galaxy? If so, do they take csfasta files
as input?
Thanks
Uma Chandran
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Hi Daquing,
No, Galaxy does not work with the data in this format and no tools have
been donated to the tool shed by the data format authors to do the
conversion. You'll have to convert before loading into Galaxy, but from
there it can be prepped using tools in the group FASTQ Manipulation.
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