Re: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except csfasta/qual data?

2014-03-13 Thread Chandran, Uma
Thank you! Uma Chandran From: Ian Donaldson [mailto:ian.donald...@manchester.ac.uk] Sent: Wednesday, March 12, 2014 5:04 AM To: Chandran, Uma; galaxy-user@lists.bx.psu.edu Subject: RE: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except csfasta/qual data? Hi Uma, If you look under 'NGS

Re: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except csfasta/qual data?

2014-03-12 Thread Ian Donaldson
From: galaxy-user-boun...@lists.bx.psu.edu [galaxy-user-boun...@lists.bx.psu.edu] on behalf of Chandran, Uma [chandra...@upmc.edu] Sent: 11 March 2014 13:14 To: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except csfasta/qual data

Re: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except csfasta/qual data?

2014-03-11 Thread Chandran, Uma
Are there mappers for SoLiD 5500 on Galaxy? If so, do they take csfasta files as input? Thanks Uma Chandran ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at

Re: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except csfasta/qual data?

2013-06-15 Thread Jennifer Jackson
Hi Daquing, No, Galaxy does not work with the data in this format and no tools have been donated to the tool shed by the data format authors to do the conversion. You'll have to convert before loading into Galaxy, but from there it can be prepped using tools in the group FASTQ Manipulation.