Hello,
This solved my problem.
Thanks.
Delong
De : Dannon Baker [dannon.ba...@gmail.com]
Envoyé : 29 août 2013 16:07
À : Delong, Zhou
Cc : galaxy-u...@bx.psu.edu
Objet : Re: [galaxy-user] Error out of memory when trying to retrieve output
Do you have debug
Hi All,
I downloaded some RNA-seq datasets from NCBI. The datasets were generated by
Illumina Hiseq 2000. I am not sure which Input FASTQ quality scores type I
should choose when run FASTQ Groomer. Below shows the scores of 2 reads of a
dataset, I renamed them as read 1 and read 2.
1)
Hi all,
I need some serious help i got output from the Miseq machine in fastq file
format. My supevisor asked me to separate barcodes, so since monday i have been
struggling to use this in command- line and executed it but either there is
some mistake that it doesnt recognize any barcodes at
Hi Jen,
This would be very useful for users who don't have access to Galaxy logs.
Could you please describe in additional detail how (sequence of steps) to cause
a tool to fail in order to make the bug icon appear ? I am assuming you can,
through the method you suggested, cause a tool/job
Hi Piyu,
Sorry to hear that you are having problems. The barcode splitter tools
requires two inputs and each must be labeled correctly when using the
tool in the UI (datatype assignment - using pencil icon or at upload).
Binaray/compressed files are not permitted in the Galaxy UI (or when
Hi Jianguang,
I agree - already Sanger Phred +33 offset quality scores, meaning you
want datatype .fastqsanger (with near certainty). To double check, take
a sample and run FastQC on it to be exact, or run this tool on the
entire dataset if you plan on doing quality checks anyway (potential
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