Hi,
I am running Galaxy locally (Ubuntu 11.04) and I am getting this error
message when I try to use mapping with bowtie:
Error indexing reference sequence
/bin/sh: bowtie-build: not found
Then I downloaded bowtie and tried to create a symbolic link using at
/bin:
ln -s /home/koala2/bowtie
Hi Todd,
Are you using the blastn wrapper from the galaxy-central repository?
Thanks,
K
On Tue, Jul 26, 2011 at 12:40 PM, Todd Yilk wrote:
> Hello all,
>
> I'm using the blastn tool and Galaxy is generating this command (pasting
> from the log file):
>
> command is: perl /opt/galaxy/dev/galax
Hello Archana,
Specific tutorial and screencast help is located here:
http://main.g2.bx.psu.edu/u/james/p/exercises
http://usegalaxy.org
center pane, scroll to quickie #15 and click
Please send all future questions directly to the mailing list and not to
individual team members. galaxy-u..
Le 27/07/2011 10:17, Peter Cock a écrit :
2011/7/27 Louise-Amélie Schmitt:
Hello Jennifer,
Aaaah so the grooming means creating the .bai file? Ok, I didn't know,
thanks for the information. But that leaves me wondering why it is necessary
to copy the data (unless the alignments are not sorted y
2011/7/27 Louise-Amélie Schmitt :
> Hello Jennifer,
>
> Aaaah so the grooming means creating the .bai file? Ok, I didn't know,
> thanks for the information. But that leaves me wondering why it is necessary
> to copy the data (unless the alignments are not sorted yet, which is
> possible knowing whe
Hello Jennifer,
Aaaah so the grooming means creating the .bai file? Ok, I didn't know,
thanks for the information. But that leaves me wondering why it is
necessary to copy the data (unless the alignments are not sorted yet,
which is possible knowing where the data comes from). I won't have muc
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