Peter,
Thanks for explaining this alternate Galaxy site!
Archauha1,
You could also check the Tool Shed to see if they or anyone else has
submitted a Galaxy wrapped version of the tool(s). And as Peter
suggested, you could ask them to submit them. Once the tools are there
(or shared with you di
FTP server.
Ilya
-Original Message-
From: galaxy-user-boun...@lists.bx.psu.edu
[mailto:galaxy-user-boun...@lists.bx.psu.edu] On Behalf Of Yury V Bukhman
Sent: Monday, November 14, 2011 3:01 PM
To: galaxy-user@lists.bx.psu.edu
Subject: [galaxy-user] enabling regular users to upload large
Hi,
we are running a local Galaxy server, administered by a bioinformatics
core group. Our end users increasingly come to us with sets of large
NGS files that they can't upload to Galaxy on their own through a web
browser. We copy their data to a Galaxy filesystem and upload into data
libra
On Mon, Nov 14, 2011 at 10:08 PM, Chauhan, Archana wrote:
> Dear Sir/Madam,
>
> I am registered with galaxy
> http://main.g2.bx.psu.edu/. But I recently came across another link as
> https://galaxy.jgi-psf.org/ . This has some very good applications
> especially w.r.t to t
Dear Sir/Madam,
I am registered with galaxy http://main.g2.bx.psu.edu/.
But I recently came across another link as https://galaxy.jgi-psf.org/ . This
has some very good applications especially w.r.t to the genome assembly (MIRA,
velvet), microbial ecology (Mothur etc) an
Hello,
The tool "NGS: QC and manipulation -> FASTQ Groomer" will prepare your
data and make it recognized by other formatting/analysis tools,
including "Clip".
Please give this a try and let us know if you have any questions. For
general help, please see http://galaxyproject.org/wiki/Learn
Hi Aurelie,
The dataset from the UCSC Table browser did not transfer completely,
which lead to the other errors. There is a limit to the number of rows
of data that can be extracted, to Galaxy or any other type of download.
It is around ~100k, but it depends on the data type. The UCSC group
w
Does anyone know if it is possible to trim sequencing adaptor sequences
away in Galaxy? and what is the necessary format for trimming sequences?
because in Clip adapter sequences I can not to see my files.
thaks
Diana Trejo, PhD
--
This message has been scanned for viruses and
dangerous con
Hi Dan!
On 14 November 2011 11:42, Daniel Blankenberg wrote:
> Can you try changeset 6267:7a72e5299fdc and see if that works for you?
>
Actually, I just got it to work now. It turns out that I really have to
open the URL that Galaxy provides on the client side (i.e., in the browser).
Thanks
Hi Joachim,
Can you try changeset 6267:7a72e5299fdc and see if that works for you?
Thanks for using Galaxy,
Dan
On Nov 13, 2011, at 12:07 PM, Joachim Baran wrote:
> Hello, again,
>
> On 2011-11-13, at 10:47 AM, Joachim Baran wrote:
>> Does anyone know why Galaxy would not retrieve the data?
On Nov 12, 2011, at 6:30 AM, Andrew South wrote:
> Dear Nate -
>
> It seems I may have upset the cluster again: I have 3 Lastz jobs running and
> cannot upload any more data. I had been uploading fine; started 3 lastz
> mapping jobs (Fasta (1 sequence) vs Fasta (~3000 sequences) output as SNP
>
> There is currently no way to do this but it would definitely be a useful
> option to have. I've opened a ticket that you can follow and/or comment on if
> you're interested:
>
> https://bitbucket.org/galaxy/galaxy-central/issue/680/preserve-dataset-names-when-exporting
I forgot to mention
Danielle,
> When using Export to File, it appears that galaxy renames each output
> file to something generic datXXX.dat and changes the filename
> extension (to .dat). How do I convince Galaxy to preserve my
> filenames so I know which file is which ?
There is currently no way to do this but it
Dear Galaxy users,
Is it possible to install .exe files in galaxy?If yes then how?
Thanx,
Shambhavi
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Pleas
Hello,
When using Export to File, it appears that galaxy renames each output
file to something generic datXXX.dat and changes the filename
extension (to .dat). How do I convince Galaxy to preserve my
filenames so I know which file is which ?
Is there some other way to download multiple output fi
15 matches
Mail list logo
