[galaxy-user] Query not starting

2013-05-13 Thread Neel Aluru
Hello, I am having problem with starting my query. For days it is showing Job waiting to run. Is the system backed up and there is a long queue? or is there a problem with my query? Normally if there is any problem it shows an error message. I am within the usage limits. I am trying to map my

Re: [galaxy-user] Map with BWA for Illumina is hung

2013-05-13 Thread Jennifer Jackson
Hi Noa, Casey did reply that the job ran, the queue was just full, resulting in a wait time. Another user who had an issue with workflows last week also replied that the processing ran. These don't always get posted back to the list, sorry about that, we generally leave it up to the sender to

[galaxy-user] A new version of the Genomic HyperBrowser has been released!

2013-05-13 Thread Sveinung Gundersen
Dear Galaxy users, We are happy to announce the release of version 1.6 of the Genomic HyperBrowser, a analysis web server built on top of Galaxy. This release is a companion to an article recently published in Nucleic Acids Research, to be included with the 2013 Webserver issue: Sandve, Geir

Re: [galaxy-user] problem uploading txt data

2013-05-13 Thread James Taylor
Are the first four lines of your file deliberately whitespace? This will definitely cause problems for file type detection (it is not a valid TSV file as is). -- James Taylor, Assistant Professor, Biology/CS, Emory University On Sun, May 12, 2013 at 10:52 AM, Chunyu Liu liuc...@gmail.com wrote:

Re: [galaxy-user] Query not starting

2013-05-13 Thread Jennifer Jackson
Hi Neel, The public Main Galaxy instance is very busy, but I can let you know that I see your account in the queue in line for processing. The best option is to leave the job alone to process, and to not delete/re-run it. If you want to send me a link to your shared history, I would be glad

Re: [galaxy-user] Query not starting

2013-05-13 Thread Neel Aluru
Hi Jen, Thank you for the reply. Yes, I noticed today that my queries are running. I apologize for deleting and re-running them. I thought something is wrong with my files and they are not working properly. I will be more patient from now on. Thanks, Neel On 5/13/13 4:59 PM, Jennifer

Re: [galaxy-user] Question on galaxy data visualization

2013-05-13 Thread Jennifer Jackson
Hello Kathryn, Trackster is the primary data visualization tool and can be accessed by clicking on the mini graph icon within a dataset: or by going to "Visualization" in the upper menu bar and starting a new track browser.