I'll take a couple of stabs at this. First, make sure that /scratch/galaxy
exists.
There's an error at the bottom of your pastie that seems to indicate it's not
there.
Second, you're right about virtualenv not being used. It is likely that root
is being used, which means that all of the
Have you installed SGE on the same machine? If so, then you should be able to
do a locate libdrmaa.so, which should point to SGE's DRMAA library. For
example,
on a machine that I use, I see this:
$ locate libdrmaa.so
/usr/lib/libdrmaa.so
/usr/lib/libdrmaa.so.1.0
$ ls /usr/lib/libdrmaa*
I forgot to add my value of DRMAA_LIBRARY_PATH. Note that I just need
DRMAA_LIBRARY_PATH to point to the library being used. So in the example
below, I had this:
echo $DRMAA_LIBRARY_PATH
/usr/lib/libdrmaa.so
-Scott
- Original Message -
Have you installed SGE on the same
This is slightly different from Masaki's question since you cannot
access Galaxy from the same machine that it's running on. What are
Galaxy's host and port settings in universe_wsgi.ini?
-Scott
- Original Message -
Hi all
I've installed Galaxy on my Mac. The sh run.sh, run but
This has been forwarded from galaxy-dev.
-Scott
- Forwarded Message -
From: Scott McManus scottmcma...@gatech.edu
To: Daniel Patrick Sullivan dansulli...@gmail.com
Cc: galaxy-...@lists.bx.psu.edu
Sent: Wednesday, August 1, 2012 4:46:26 PM
Subject: Re: [galaxy-dev] PBS Server Throwing
I'm forwarding this to galaxy-user instead of galaxy-dev.
-Scott
- Forwarded Message -
From: Scott McManus scottmcma...@gatech.edu
To: Sarah Maman sarah.ma...@toulouse.inra.fr
Cc: galaxy-...@lists.bx.psu.edu
Sent: Wednesday, August 1, 2012 4:18:29 PM
Subject: Re: [galaxy-dev] Local
Hi Kevin-
That's truly odd. The error happens when the offending file is imported, which
means that
it is a syntax issue that should have been seen earlier. I'll take a look at
this soon (unless someone
else beats me to it).
In the meantime, of course, do not use the use_tasked_jobs on
Yes, Galaxy stores the stdout and stderr in the database
once the job is complete. The .o and .e files are automatically
removed once this is complete.
You should be able to click on the tool panel's (the panel
on the righthand side) info button for each tool, which is
what it appears you are
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