Re: [galaxy-user] Problem uploading files gt 1 Mbyte to Galaxy Cloud

2012-01-23 Thread Dannon Baker
Great, glad it worked for you! And, once we release a new AMI, it'll be fixed retroactively. That is, you'll be able to use your existing cloud setup with the new AMI and it should just work. -Dannon On Jan 23, 2012, at 5:35 AM, Greg Edwards wrote: > Dannon, > > Cool, that seems to have wo

Re: [galaxy-user] Problem uploading files gt 1 Mbyte to Galaxy Cloud

2012-01-23 Thread Greg Edwards
Dannon, Cool, that seems to have worked. I set server { listen 80; client_max_body_size 500m; in /opt/galaxy/pkg/nginx/conf/nginx.conf and issued sudo kill -HUP `cat /opt/galaxy/pkg/nginx/logs/nginx.pid` and it's uploading my test files of 2mb to 25mb ok. I think

Re: [galaxy-user] Problem uploading files gt 1 Mbyte to Galaxy Cloud

2012-01-23 Thread Dannon Baker
It's the other nginx.conf at /opt/galaxy/pkg/nginx/conf/nginx.conf, I don't think that one you found is used. And it isn't explicitly set at all currently, so the default 1m gets applied. And, to reload with the modified config, I think this should do the trick (as the ubuntu user)- sudo kill

Re: [galaxy-user] Problem uploading files gt 1 Mbyte to Galaxy Cloud

2012-01-23 Thread Greg Edwards
Hi Dannon, I found nginx.conf at /opt/galaxy/pkg/nginx_upload_module-2.0.12/nginx.conf It contains .. client_max_body_size 100m; That looks like 100 Megabyte ?? but seems to result in 1 Megabyte. Can I set it to 1m, or 1g ? Can't see how to restart nginx yet. Thanks, Greg E

Re: [galaxy-user] Problem uploading files gt 1 Mbyte to Galaxy Cloud

2012-01-23 Thread Greg Edwards
Dannon, Thanks. Glad it's not my error ! Could ypu let me know where nginx.conf is, and how to "restart the nginx process" ? This is a prototype proof-of-concept implementation, and I think a once-per-instance custom fix which preserves the simple ability to use Get Data / Upload Files From Your

Re: [galaxy-user] Problem uploading files gt 1 Mbyte to Galaxy Cloud

2012-01-23 Thread Dannon Baker
Hi Greg, This is a problem with the default client_max_body_size option in nginx being set far too small in the nginx.conf on the cloud AMI. It'll be fixed with our next AMI update, but to fix it you have to edit the nginx.conf on your cloud node to change the client_max_body_size to something

[galaxy-user] Problem uploading files gt 1 Mbyte to Galaxy Cloud

2012-01-23 Thread Greg Edwards
Hi, I'm building a Galaxy Cloud implementation, and running into a problem uploading data files > 1 Mbyte, or 1,048,576 bytes. I've started Galaxy Cloudman and a single server, all according to to the Wiki. I can upload fasta format files < 1048756 bytes, and general CSV format peptide files, and