You'll need to update the tool_data_table_conf.xml file in your Galaxy home
directory.
If you haven't made changes to the file, you can copy
tool_data_table_conf.xml.sample to tool_data_table_conf.xml If you have made
changes, add these entries to the file:
--
value, dbkey, name, path
Thanks but after adding those lines when I stop and started the server
using --daemon mode, the server is not working? What might be the problem?
On Fri, Oct 19, 2012 at 9:01 AM, Jeremy Goecks wrote:
> You'll need to update the tool_data_table_conf.xml file in your Galaxy
> home directory.
>
> If
Hello ,
I tried everything possible according to the reply I got from Jen , helping
me fix my problem but is not working.Please see below .
Is it possible that because the usage shows 91% I am not able to retrieve
anything back to display? Might sound ridiculous but
have no clue !! I still have no
Hello Didier,
A custom reference genome can be used with the RNA-seq tools. In short,
you load a fasta file (your custom reference genome) using FTP to the
public Galaxy server, then select it for use with the tools (genome
"from the history"). Help is in our wiki:
http://wiki.g2.bx.psu.edu/S
On Oct 18, 2012, at 1:43 AM, Todd Oakley wrote:
> Yes, daemon/stop-daemon is the best way. However, to stop a process that was
> not started with --daemon, this is what I do:
>
> ps aux | grep galaxy
>
> Identify the process numbers for 3 Galaxy processes, which will change every
> time Gala
Hello Kshama,
I went into your account and examined your data. Starting with "Saved
Histories", the default view is all active histories in the center
panel. In your case right now, none of these have hidden or deleted
datasets.
Next, I clicked on "Advanced Search" in this same view in the m
I have had it happen occasionally, but didn't pay attention to the
details. Perhaps I forget to put --reload sometimes. Also, it seems
that sometimes the Galaxy processes do not all stop with --stop-daemon.
I wrote the text below as a recipe for people in my lab to restart in
those situation
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