Good Afternoon Sheena:
Can you please explain what is different between the Ensembl and UCSC
Zebrafish Zv9 genome sequences ?
--Hiram
On 11/4/11 2:50 PM, Scroggins, Sheena wrote:
How do I upload the Zebrafish genome from Ensembl to my user history
in Galaxy? I'm trying to map my RNA-Seq data
-
From: Jennifer Jackson [mailto:j...@bx.psu.edu]
Sent: Tuesday, November 08, 2011 6:58 AM
To: Scroggins, Sheena
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [galaxy-user] Uploading Genome from Ensembl
Hello Sheena,
If you concern with using the UCSC version of the database has to do with the
chro
Hello Sheena,
If you concern with using the UCSC version of the database has to do
with the chromosome naming and downstream Cufflinks analysis using
Ensembl's reference GTF files, please see #5 on our FAQ, which
demonstrates how to modify an Ensembl GTF file to be compatible with the
UCSC ch
Can you clarify what is different between the Zv9 version of the UCSC Zebrafish
and the Zv9 version of the Ensembl Zebrafish genome ? They both appear
to have the identical number of 1,412,464,843 nucleotides.
--Hiram
- Original Message -
From: "Sheena Scroggins"
To: galaxy-u...@bx.psu.
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