[gmx-users] AFM pulling simulations

Hello All, I am looking for a very simple (step-by-step) tutorial on AFM pulling simulations (constant force/ constant velocity) with gromacs. Can someone point me to a simple tutorial to perform these simulations with gromacs? Thanks, --

Re: [gmx-users] AFM pulling simulations

X Rules wrote: Hello All, I am looking for a very simple (step-by-step) tutorial on AFM pulling simulations (constant force/ constant velocity) with gromacs. Can someone point me to a simple tutorial to perform these simulations with gromacs? Thanks,

Re: [gmx-users] AFM pulling simulations

http://www.gromacs.org/Documentation/Tutorials On 03/22/2011 11:02 AM, X Rules wrote: Hello All, I am looking for a very simple (step-by-step) tutorial on AFM pulling simulations (constant force/ constant velocity) with gromacs. Can someone point me to a simple tutorial to perform these

RE: [gmx-users] AFM pulling simulations

apply the force in that direction). Date: Tue, 22 Mar 2011 11:15:54 -0400 From: jalem...@vt.edu To: gmx-users@gromacs.org Subject: Re: [gmx-users] AFM pulling simulations X Rules wrote: Hello All, I am looking for a very simple (step-by-step) tutorial on AFM pulling simulations

RE: [gmx-users] AFM pulling simulations

too eager to send an email.. I think playing with editconf with princ flag should do the trick .. sorry folks and thanks for the help !! From: xru...@live.com To: gmx-users@gromacs.org Subject: RE: [gmx-users] AFM pulling simulations Date: Tue, 22 Mar 2011 15:47:41 + Thanks

Re: [gmx-users] AFM Pulling Simulations

On 26/08/10 19:56, chris.ne...@utoronto.ca wrote: Natalie: It would also be a good idea for you to ensure that your supervisor knows how difficult it is to learn and correctly apply these methods. If they think that a person can learn linux and gromacs and the gromacs pull code in a short

[gmx-users] AFM Pulling Simulations

Hi, I'm a complete novice when it comes to using any kind of command prompt based programmes and hadn't even heard of Linux until my supervisor wanted me to use gromacs ... so needless to say I'm running into a few problems!! I've managed to perform all the generic energy minimisations

Re: [gmx-users] AFM Pulling Simulations

Natalie Stephenson wrote: Hi, I'm a complete novice when it comes to using any kind of command prompt based programmes and hadn't even heard of Linux until my supervisor wanted me to use gromacs ... so needless to say I'm running into a few problems!! I've managed to perform all the

Re: [gmx-users] AFM Pulling Simulations

Quoting Justin A. Lemkul jalem...@vt.edu: Natalie Stephenson wrote: Hi, I'm a complete novice when it comes to using any kind of command prompt based programmes and hadn't even heard of Linux until my supervisor wanted me to use gromacs ... so needless to say I'm running into a few

[gmx-users] AFM Pulling Simulations

Natalie: It would also be a good idea for you to ensure that your supervisor knows how difficult it is to learn and correctly apply these methods. If they think that a person can learn linux and gromacs and the gromacs pull code in a short period of time, then the stage is set for