Re: [graph-tool] how to improve similarity for Ising model and SIS model

2020-05-12 Thread gege
Hi, prof.Peixoto. I reread the paper and found that the existence of edges depends on their posterior. So should I delete edges whose posteriors are less than 0.5 before comparing with the original network? I'm also wondering how to calculate the inverse temperature for the food web network. Is

Re: [graph-tool] how to improve similarity for Ising model and SIS model

2020-03-24 Thread Tiago de Paula Peixoto
Am 24.03.20 um 09:12 schrieb gege: > Hi, professor Peixoto. > Please forgive me. Comparing carefully, I am still confused about what is > the difference between the example in the documentation and the SIS model in > the paper. I only found that the dolphins network is undirected but the >

Re: [graph-tool] how to improve similarity for Ising model and SIS model

2020-03-24 Thread gege
Hi, professor Peixoto. Please forgive me. Comparing carefully, I am still confused about what is the difference between the example in the documentation and the SIS model in the paper. I only found that the dolphins network is undirected but the open-flight network is directed. So should I deal

Re: [graph-tool] how to improve similarity for Ising model and SIS model

2020-03-23 Thread Tiago de Paula Peixoto
Am 23.03.20 um 15:25 schrieb gege: > Dear professor Peixoto, > Thank you for reply! > > The dynamic example in the document sets 100 initial infected points and > iterates for 10 times simultaneously. So the epidemic process is ongoing on > a network and time T belongs to [0,9]. Then the time

Re: [graph-tool] how to improve similarity for Ising model and SIS model

2020-03-23 Thread gege
Dear professor Peixoto, Thank you for reply! The dynamic example in the document sets 100 initial infected points and iterates for 10 times simultaneously. So the epidemic process is ongoing on a network and time T belongs to [0,9]. Then the time series is copied to a same but masked network.

Re: [graph-tool] how to improve similarity for Ising model and SIS model

2020-03-23 Thread Tiago de Paula Peixoto
Am 18.03.20 um 03:38 schrieb gege: > Hi, everyone! > I met a problem when I'm learning how to use graph-tool. I read the paper, > network reconstruction and community detection from dynamics, and I am > trying to achieve the same result. When I followed the same settings for > real networks with