cal Functions tool. The result is summed over all included
rows/columns.
If you need output more like the 2D FFT modulus output, just with transform
only in one direction performed, I can implement it, it should be quite eas
iewing should involve as little processing as possible. Just
loading some of the hundred-channel files or my artificial 8192×8192
surfaces is enough. I do not want to be forced to introduce previewing
upon explicit click
to write it.
Regards,
Yeti
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he tip because the resolutions
should match. Perhaps there's some rounding problem.
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gard. Especially eccentric
controls never seen in other programs such as tick boxes next to file
names should be avoided.
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Read this article and le
ntions, the previews of my STM data is useless
> because all of them have significant tilt.
Well, this definitely isn't a 2.25 item as I want to release it in a
finite time. Then... while the conceptual difference between me saying
I will not implement it and me not saying I w
On Wed, May 25, 2011 at 05:26:07PM +0100, Jérôme Borme wrote:
> Yeti answered a very similar request some months ago, with code directly
> usable. See:
>
> http://www.mail-archive.com/gwyddion-users@lists.sourceforge.net/msg00417.html
Yes, it would be nice if someone was willing to
00527281274
Sorry, I don't have access to Biochimica et Biophysica Acta (BBA) –
Bioenergetics. Could you describe it what you want to calculate?
Regards,
Yeti
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you get bla
how
to display data in a GUI, whereas gwybatch is a puerly command line
program that works even if no display is available (which requires some
care in the initialisation code). So which one is a good starting point
for your own program depends on what you intend to do.
Regards,
Y
/documentation/user-guide-en/file-formats.html
yet you cannot load them, or
(b) your format is unuspported and you want to add support
http://gwyddion.net/file-formats.php
?
Yeti
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r
which is a bit sloppy. I will try to make the Nanonics import module
smarter but please send the problematic file to y...@physics.muni.cz,
compressed.
Regards,
Yeti
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On Tue, May 31, 2011 at 05:48:41PM +0200, David Nečas (Yeti) wrote:
> I will try to make the Nanonics import module
> smarter but please send the problematic file to y...@physics.muni.cz,
> compressed.
I modified the import module but I need the problematic file for
testi
Gwyddion 2.25 is now available for download at
https://sourceforge.net/projects/gwyddion/files/gwyddion/2.25/
(all released files)
http://gwyddion.net/download/2.25/
(source code)
Released files are signed with PGP/GnuPG key
"David Nečas (Yeti) ", id 62A07732
fingerpr
confirm? Just a quick install and install (please?).
Mea culpa; while the language chooser was updated the list of MO files
to include was not so the translation is missing, sorry. We will see if
any other packaging problems emerge and perhaps an updated installer can
b
mably Gtk+ 2.16-based)
that makes everything work on MS Windows
But neither is easy (otherwise we would have done it).
Regards,
Yeti
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rors in the terminal or
gwyddion.log?
What do you get if you use the 2D FFT filter or do 2D FFT?
Yeti
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Installation's a snap, and flex
ly lacks units that should be m⁻¹.
> Is it MHz? Further, is it
> possible to scale the x-axis to see low-frequency signals?
At present, no. But it's possible in the 2D FFT filter.
Yeti
--
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the line-by-line fit gives me bands of different contrast by the
> islands.
Hello, usually you can use the Path Level tool in such cases, see
http://gwyddion.net/documentation/user-guide-en/editing-correction.html#path-l
On Mon, Jun 06, 2011 at 01:36:42PM +0200, David Nečas (Yeti) wrote:
> perhaps an updated installer can
> be released then.
I released MS Windows installer 2.25-1 that should really include the
Spanish translation (I checked this time).
Regards,
Regards,
Yeti
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indows build running under Wine
which means I should be able to fix it.
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it at least works for us in MS Windows (XP) – if by hotkeas
you mean Ctrl-O for file opening, Ctrl-H for history, etc.
Yeti
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Why? It contains a
s around the selected point (with mouse).
The horizontal and vertical coefficients of the plane fit are then used
to approximate the local derivatives.
Yeti
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On Mon, Jul 11, 2011 at 02:56:10PM +0200, David Nečas (Yeti) wrote:
> On Fri, Jul 08, 2011 at 09:44:07PM +0400, Daniil Bratashov wrote:
> > On Fri, 08 Jul 2011 10:28:10 -0600
> > Max Perez wrote:
> >
> > > The file is at the below link. Thanks! -Max
> >
>
fications needs to be
possible to switch on/off as it is confusing during normal work. I will
look into it.
Yeti
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Why? It contains a definiti
e fixed value
Then just get rid of the corresponding sharp peak when you export the
distribution.
Regards,
Yeti
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All of the data generated in your IT infrastructure is seriously valuable.
Why? It contains a
tting may
override it so try to change it in the GUI.
Regards,
Yeti
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more
understandable by normal people than `POSIX number format' are
welcome...
Yeti
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Why? It contains a definitive record of application p
e get the shortcuts to
the default state.
Regards,
Yeti
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t
the new Gwyddion version, with all possible items present but commented
out if you did not change any shortcut. This works for me. Just
uncomment the line corresponding to the tool and put "p" or
something like that there (the item format should be obvious from
looking at the existing entrie
since Gwyddion does not record such
information. You can calculate the difference, of any function of it,
between the modified and original data in Arithmetic and export it
though.
If you want to just save the data in a text matrix form then save them
with extension .txt.
Regards,
ject)' failed aborting...".
> Then I launch again Gwyddion and it works correctly.
This was a bug in code path that is (normally) taken only once. Should
be fixed now.
Yeti
--
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cannot be
loaded without uses intervention (raw data, ...).
In addition, there are two ways an image with different pixel and
physical aspect ratio can be displayed: with square pixels or with
physically right aspect ratio. The preview always uses the firs
On Wed, Jul 20, 2011 at 08:46:33PM +0200, Mathias Müller wrote:
> On 0, "David Nečas (Yeti)" wrote:
> > On Wed, Jul 20, 2011 at 11:20:23AM +0200, Mathias Müller wrote:
> > >
> > > 1) Stability...gwyddion crashes randomly. This can occur directly after
>
hysical dimensions are arbitrary – more precisely, it shows dimensions
you would get if you did not change anything in the import dialog and
just pressed OK.
Regards,
Yeti
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you want something
specific there you can set the label in Labels tab to a fixed text.
Yeti
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This modeling tool is based on patent-pending intellectual property that
has been used succes
ble on this kind of device would mean ditching the
entire user interface and creating it again from scratch. Besides, as
François noted, Apple clearly does not want you to run Gwyddion on its
shiny toys.
Regards,
Yeti
--
g the start and end
> point of the manipulation, and a DataLine could be associated with it.
> Would it be possible to include this type of functionality?
Hello, could you describe how the data of the manipulation path looks
like? It is a
add this as a
funny type of spectra, with curves attached to specific lines instead of
points – I will have to look whether it can be done without stretching
the concept too far.
Regards,
Yeti
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a description of the
file format.
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the tools develope
y-direction is
> set to the aspect ratio.
This is probably a bug in a file import module. Since Gwyddion can load
80+ different file types, to fix it, I need to know *which* files are
loaded wrong. So please send me some misbehaving files to reproduce
the problem and for testing of the fi
elling in the file chooser.
Present in 2.25.20110816 or later. Please try.
Regards,
Yeti
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ter.
If someone has files with ‘Aspect ratio’ header field different from 1:1
and this change breaks loading of your files please complain.
Yeti
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ng masked like correction but it needs some work. IIRC it has
not been sent to the list but I can send it together with my comments if
anyone is interested.
Yeti
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either have an include/exclude/ignore argument or use the
mask inclusively.
* Instead of adding the standard include/exclude/ignore choice in the
GUI the patch adds a new data processing item ‘Masked Linear Line
Correction' that performs row-wise linear levelling, excluding the
mask if pre
a choice had to be made – and it is
left-handed.
We tried to explain in the user guide how direction and angles in the
image plane are to be understood. If something is inconsistent with
this description please complain.
Re
all mask
operations allowed choosing what to do with the existing maks... At
least it is possible by saving the first mask using Extract Mask first
and then using Mark With.
Regards,
Yeti
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kGLExt version
are buggy so you won't be able to use 3D view.
Regards,
Yeti
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to prefix
and again, if you get an error post it (I assume
apt-get build-dep gwyddion
passed so you should have all dependences installed).
Regards,
Yeti
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Finally
On Wed, Aug 31, 2011 at 11:19:58AM -0400, William DiPippo wrote:
> I need to apply gwyddion's histogram function solely to data I have masked.
Gwyddion cannot do that, sorry.
Yeti
--
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the case of partial cell
> profile, it's a wrong operation:
I did not write this but IMO it is wrong in all cases (unless the norm
says somewhere it has to be done), especially since the levelling was
done after the splitting to roughness an
On Thu, Sep 01, 2011 at 08:21:21AM +0200, David Nečas (Yeti) wrote:
> On Wed, Aug 31, 2011 at 11:19:58AM -0400, William DiPippo wrote:
> > I need to apply gwyddion's histogram function solely to data I have masked.
>
> Gwyddion cannot do that, sorry.
It can now. But regardi
nge numerically your
method is probably the simplest currently possible.
Yeti
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On Thu, Sep 01, 2011 at 08:21:21AM +0200, David NeÄas (Yeti) wrote:
> On Wed, Aug 31, 2011 at 11:19:58AM -0400, William DiPippo wrote:
> > I need to apply gwyddion's histogram function solely to data I have masked.
>
> Gwyddion cannot do that, sorry.
It can now. But regardi
mit Finkler
>
>
>
The polynomial levelling does not fit the powers 1, x, x², x³, etc.
because their orthogonality is poor but, equivalently, it fits and
subsequently subtracts Legendre polynomials up to the specified degree.
The usual polynomial coefficients are not even calculated
tive height distribution
http://gwyddion.net/documentation/user-guide-en/statistical-analysis.html#height-angle-distribution
caulculated by the statistical functions tool.
Hope it helps,
Yeti
--
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the bottom so it's 1-cdh.
Yeti
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Virtualization increases hardware utilization and delivers a new level of
agility. Learn what those decisions are a
uch as plane leveling), and then
> that image is saved as a .gwy, is the data contained in the gwy the
> corrected data, or the raw data plus a filter?
The processed data, exactly as you see it displayed.
Regards,
Yeti
environments than
XFce and GNOME but I cannot do system integration to environments I do
not use.
Regards,
Yeti
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r foo.png (tiff, jpeg, ...) as the
file name.
Yeti
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All the data continuously generated in your IT infrastructure contains a
definitive record of customers, application performance, security
threats, fraudulent activity
alue’ or a similar function beforehand can reduce errors related to
finite precision of real numbers but normally this should not be an
issue.
Yeti
--
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On Thu, Aug 25, 2011 at 08:45:14PM +0200, David Nečas (Yeti) wrote:
> > 2) When inverting a mask, the thumbnail is not updated in the data
> > browser, I admit it is not really annoying...
>
> Ah, the thumbnail is not updated after any [purely] mask change. This
> does no
ate specs. So I will have to look at what documentation I have first.
Yeti
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saving
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all.
So the problem may occur only in specific situations. Can you provide
the file (asusming it's reproducible on a single file) and the part of
your ~/.gwyddion/settings that start with "/module/pixmap?
Regards,
Yeti
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I cannot see why the Scan size parsing could differ in MS Windows and
Linux.
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; the values returned by gwy_color_axis_get_range are the ones of the data
> before leveling. Adding serveral gtk.main_iteration_do(False) calls can
> be used as a workaround.
I see. Does the attached patch fix it for you?
Yeti
Index: mod
volve
having actual MS Windows. So the tools consist of a text/code editor of
your choice and the standard GNU toolchain.
Regards,
Yeti
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http
ers could use this. So if you prepare a patch that defines
at least the essentials such as the function, params, formula, ... then
I can fill and fix the rest.
Regards,
Yeti
--
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it in different locales just to be sure as it is a common
source of weird import issues (I cannot see anything locale-dependent in
the code though).
Was the file transferred correctly to the Linux box?
Can you compile the Gwyddion development snapshot f
ble; only new features in them tend to be
unstable.
Yeti
--
All the data continuously generated in your IT infrastructure
contains a definitive record of customers, application performance,
security threats, fraudul
i know to install it.
Here:
http://gwyddion.net/download.php#head
Yeti
--
All the data continuously generated in your IT infrastructure
contains a definitive record of customers, application performance,
securit
t contains three values
because the reason can be formatting in the e-mail, etc.
Regards,
Yeti
--
All the data continuously generated in your IT infrastructure
contains a definitive record of customers, application perfor
Please try tomorrow's (i.e. 2.25.20111202) or later development version
and report any import problems. Actually, I see 20111202 is already
today's version. Going to bed...
Regards,
Yeti
--
All the data co
or the equivalent in your user
directory on MS Windows if it worked there), scripts that you run from
the console can be stored anywhere you find convenient. See the intro
at http://gwyddion.net/documentation/pygwy.php for how to start a pywgy
mod
ing normally
This is quite strange. Do you use other Gtk+-based applications, e.g.
The GIMP, and do they work normally? Do you observe the problem only in
Gwyddion data displays (2D, 3D, graphs) or also in common windows such
as the fi
clicking in any inactive area and dragging
(without pressing Alt) – and somehow fails to recognize what areas are
actually inactive. So I'd try to find and disable it.
Yeti
--
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n (but that was the times
of compilation with MSVC).
Working pygwy on MS Windows would be a nice addition in 2.27 – in fact,
it would be *the* reason to release a new version.
Regards,
Yeti
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there as this is
probably no longer of interest for normal users.
Regards,
Yeti
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Gwyddion 2.26 is now available for download at
https://sourceforge.net/projects/gwyddion/files/gwyddion/2.26/
(all released files)
http://gwyddion.net/download/2.26/
(source code)
Released files are signed with PGP/GnuPG key
"David Nečas (Yeti) ", id 62A07732
fingerpr
the OS is 32bit or you
do not have much memory)
I have worked with 8192×8192 .gwy files (≈500 MB) without any problems
aside from worse responsiveness of the user interface but I used only a
handful of processing functions.
Yeti
-
://gwyddion.net/faq.php#faq020 for a BibTeX record.
Regards,
Yeti
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On Thu, Feb 02, 2012 at 10:10:03AM +, Andrés Muñiz Piniella wrote:
> Could I have done this with Gwyddion?
No; taking profiles along other paths than just straight lines has been
on my nice-to-have feature list for a long time but I have never got to
implement it...
Y
. Curvature at arbitrary points can be
calculated too but it is not convenient...
Regards,
Yeti
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show toolbox: 0.1 ms
STARTUP: 1096.9 ms
If you get very long gtk_init() part it might be something with x11
initialisation but I have only a vague idea how these things work on
OS X.
Yeti
--
Virtua
isplay everything.
And it *does* display a splashscreen showing the startup progress as
soon as possible.
So as far as I can tell everything already works as you suggest and you
did not provide the data that would indicate what
hat puzzles me is that you seem to never
respond to anything that would lead to any hard data. I still have no
idea what times are printed by --startup-time, whether or when you see
the splash screen displayed, what it says when it seems stuck
ver dependences if they were used for the
first time).
Yeti
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On Fri, Feb 10, 2012 at 01:19:30PM +, lev wrote:
> what was again the flag to use to monitor the timing please?
--startup-time
You really delete received mail quickly ;-)
Yeti
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ogical AFMs and can
obtain meaningful global curvatures of surfaces measured by AFM but for
most people the warning was appropriate...
Regards,
Yeti
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Cloud
PIC
>
> /usr/bin/ld: final link failed: Bad value
Please try the attached patch. I actually wonder that newer gcc/linker
do not complain about this bug too.
Yeti
Index: libprocess/gwycalibration.c
===
--- libprocess/gwycal
menu path.
> Well, after 10th time became quite annoying. :)
Just press Ctrl-Shift-F to re-show the dialog. Works with all data
procesing functions. See
http://gwyddion.net/documentation/user-guide-en/keyboard-shortcuts.html
for the description of Ctrl-F a
Gwyddion 2.27 is now available for download at
https://sourceforge.net/projects/gwyddion/files/gwyddion/2.27/
(all released files)
http://gwyddion.net/download/2.27/
(source code)
Released files are signed with PGP/GnuPG key
"David Nečas (Yeti) ", id 62A07732
fingerpr
t that would be time-consuming.
If you manage to mark your nanotubes with mask as ‘grains’ then yes
(this might be best done using morphological operators that are not
implemented in Gwyddion though). I do not know what your data look
the ‘run a program on all files matching certain
criteria’ part there.
Regards,
Yeti
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Gwyddion 2.28 is now available for download at
https://sourceforge.net/projects/gwyddion/files/gwyddion/2.28/
(all released files)
http://gwyddion.net/download/2.28/
(source code)
Released files are signed with PGP/GnuPG key
"David Nečas (Yeti) ", id 62A07732
fingerpr
e results are not robust.
Yeti
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will in
thing as a data processing function because that's the way
to get it to the menus.
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nice but, as with everything,
someone would have to implement it. At present it is not even possible
to run scripts easily from within Gwyddion and
import gwy
outside Gwyddion is not possible at all. So I would not be so
ambitious; there is a lot much lower hanging fruit still hanging and
han
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