Re: [HCP-Users] Visualizing pconn.nii as graph

2018-09-13 Thread Timothy Coalson
Workbench doesn't have that kind of visualization - it can be displayed as a matrix, or interactively selecting a "seed" parcel and coloring the other parcels. The FSLNets stuff has something related to what you want, but is based on networks, and doesn't really spatially organize them:

[HCP-Users] Visualizing pconn.nii as graph

2018-09-13 Thread Leonardo Tozzi
To Whom it may concern, I have created a pconn.nii file based on connectivity measures obtained based on a parcellation that I put together (dlabel.nii), which contains cortical and subcortical areas (Glasser + Gordon subcortical). This question might be trivial, but I would like to know if it

Re: [HCP-Users] Cortical labels persisting when merging cortical and subcortical regions to create parcellation

2018-09-13 Thread Timothy Coalson
Label commands take pains to avoid making collisions between labels with different names, or altering label key values when not necessary. They also generally don't remove labels simply for not being used in the output, because that could introduce problems when a small, hard to find area is

[HCP-Users] Cortical labels persisting when merging cortical and subcortical regions to create parcellation

2018-09-13 Thread Leonardo Tozzi
To Whom it may concern, I followed the indications in this thread: https://www.mail-archive.com/hcp-users@humanconnectome.org/msg03976.html To merge the subcortical labels of Gordon333_FreesurferSubcortical.32k_fs_LR.dlabel.nii with the cortical ones from