Re: [HCP-Users] get ROIs average

2016-10-12 Thread Jean-Francois Cabana
Thanks Matt and Tim for your answers. The -cifti-parcellate command seems to be just what I needed and working fine with the aparc file. I'll have a look at this new parcellation though, that looks interesting! Best, JF De : Glasser, Matthew [mailto:glass...@wustl.edu] Envoyé : 12 octobre 2016

Re: [HCP-Users] Glasser nature atlas

2016-10-12 Thread Glasser, Matthew
We do need to get an MSM binary out with a revised MSMSulc config file. This will hopefully happen soon, we are just waiting for the author of a software library to e-mail us back about some licensing stuff. Peace, Matt. From:

Re: [HCP-Users] Extract 137 RSN networks - Glasser et al. - Nature 2016

2016-10-12 Thread Timothy Coalson
Sounds like it made a temporary file for some reason, but the temporary file was corrupt somehow (found a similar error on the freesurfer list). You should probably ask the freesurfer list what the problem might be. Tim On Wed, Oct 12, 2016 at 12:27 PM, Francesco Sammartino <

Re: [HCP-Users] Glasser nature atlas

2016-10-12 Thread Jared P Zimmerman
Thanks Michael, Donna, and Matt, RE: Michael, definitely aware this is an inferior approach to true subject-specific parcellation but given that we don’t have the requisite data to run the classifier this seems like an appropriate approach to use the parcellation. RE: Donna and Matt, thanks

[HCP-Users] Extract 137 RSN networks - Glasser et al. - Nature 2016

2016-10-12 Thread Francesco Sammartino
Hi We are aiming to integrate the new high resolution cortical parcellation and the 137 resting state networks into our probabilistic tractography (FSL based) pipeline. Could you please tell me how should I convert to nifti labelmaps the content of the file

[HCP-Users] Fwd: Extract 137 RSN networks - Glasser et al. - Nature 2016

2016-10-12 Thread Francesco Sammartino
​ Hi We are aiming to integrate the new high resolution cortical parcellation and the 137 resting state networks into our probabilistic tractography (FSL based) pipeline. Could you please tell me how should I convert to nifti labelmaps the content of the file

Re: [HCP-Users] Glasser nature atlas

2016-10-12 Thread Dierker, Donna
If you can’t do MSMAll, then consider using just sulc, rather than sulc+curv. See figure 4, row B, in Emma Robinson’s paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4190319/figure/F4/ I have heard David describe curvature as capturing more local folding, sulc global folding. In my