Hello, HCP experts,
Any progress at present?
Thanks for your patience and kindly help!
Best,
Felix
发件人: hcp-users-boun...@humanconnectome.org
代表 Felix Yuan
发送时间: 2018年6月18日 13:27
收件人: hcp-users@humanconnectome.org
主题: [HCP-Users] how to convert BTI space to MNI space
Hi, HCP experts,
Sorry
The entire shape of subject's cortical surfaces are represented in
".surf.gii" files in the subject folders. These are available in MNI space
in the MNINonLinear subfolder. However, different subject's brains have
different shapes, so there usually aren't good anatomical coordinates for
The issue with using FreeSurfer 6.0 in the HCP Pipelines is that some aspects
of the surface generation on HCP-Young Adult data were better using the
FreeSurfer 5.3.0-HCP release. We are in the process of checking the
performance of a beta version of FreeSurfer 6.X on HCP-YA data.
If you use
On Sat, Jun 16, 2018 at 8:36 PM, Parvathaneni, Prasanna <
prasanna.parvathan...@vanderbilt.edu> wrote:
> Hi All,
>
> Thank you for suggesting “ciftify” on non-HCP datasets. We are trying to
> run HCP pipeline using “ciftify" tool on our custom dataset and have few
> questions
>
>- For
Hi Mike:
Ah - very helpful.
We may use the FIX-cleaned data for other things but right now we are doing
work on methods development and would prefer not to use data cleaned with ICA.
We can also of course process the unprocessed data and use that :)
We are in general having trouble with
Hi,
Have you checked the Release Notes documentation? We don't have a description
of every single file at this point in time. (The Pipeline code is the
description). If you have a question about a particular file, feel free to
contact this list.
Cheers,
-MH
--
Michael Harms, Ph.D.
Hi,
rfMRI_REST1_7T_PA_Atlas_1.6mm_MSMAll.dtseries.nii is the CIFTI version, using
MSMAll registration, on a surface mesh with ~ 1.6 mm (average) vertex spacing.
Note that we've provided CIFTI data on both 1.6 mm and 2.0 mm meshes.
Depending on your research question, the latter may be easier
Hi there:
I have downloaded the 1.6mm 7T minimally preprocessed files and after looking
at a few subjects, I can't find the actual resting state timeseries (presumably
of 900 volumes). Here are the .nii files I have for an example subject:
rfMRI_REST1_7T_PA_Atlas_1.6mm_MSMAll.dtseries.nii
