Okay, but be aware that the volume registration isn't perfect even for
subcortical structures. We go to some trouble to deal with the
non-overlapping edges without mixing data across individually-identified
subcortical structures when we put subcortical data into CIFTI. I don't
know how bad the
;mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Extracting Thalamus Brainordinates
Thanks Tim and Ely,
This is helpful.
Tim, I think I prefer your second suggestion (using the standard cifti
MNINonLinear group definition). I need a one to one correspondence
between e
uary 22, 2018 at 2:50 AM
To: Timothy Coalson <tsc...@mst.edu<mailto:tsc...@mst.edu>>
Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Extractin
Thanks Tim and Ely,
This is helpful.
Tim, I think I prefer your second suggestion (using the standard cifti
MNINonLinear group definition). I need a one to one correspondence
between every point in the thalamus across individuals and to a template
thalamus. The reason (and perhaps I need to
It may be better to use the individual subject's "native space"
definitions. The files in the T1w folder are in what we refer to as native
volume space (it is actually rigidly-aligned MNI space, but rigid alignment
preserves shape, so it can be used as if it were distortion-corrected
scanner
Hi Claude,
Are you using workbench viewer? If so, you should be able to identify
particular thalamus or other subcortical MNI coordinates in the Volume tab
(brainordinate subcortical coordinates = MNI coordinates). You can also
split the thalamus structure out from subject¹s CIFTI file, if you
