The public H5allocate/resize/free_memory() API calls use the library's memory
allocator to manage memory, if that is what you are looking for.
https://support.hdfgroup.org/HDF5/doc/RM/RM_H5.html
Dana Robinson
Software Developer
The HDF Group
From: Hdf-forum on behalf of Jordan
Hend
t as of
the current implementation, but in terms of the interface contract) to
use H5free_memory() on the buffer passed into an H5Z plugin, replacing
it with a new (post-compression) buffer allocated via H5allocate()?
On Wed, Nov 8, 2017 at 1:23 PM, Dana Robinson wrote:
, 2017 at 13:46
To: Dana Robinson , "m.k.edwa...@gmail.com"
, HDF List
Subject: Re: [Hdf-forum] Collective IO and filters
Dana,
would it then make sense for all outside filters to use these routines? Due to
Parallel Compression's internal nature, it uses buffers allocated via H5M
filters on Windows. It's interesting that those functions will now be
needed for parallel compression.
Dana
From: Hdf-forum on behalf of Dana
Robinson
Reply-To: HDF List
Date: Wednesday, November 8, 2017 at 13:52
To: Jordan Henderson , "m.k.edwa...@gmail.com"
, HDF List
Subject:
In develop, H5MM_malloc() and H5MM_calloc() will throw an assert if size is
zero. That should not be there and the function docs even say that we return
NULL on size zero.
The bad line is at lines 271 and 360 in H5MM.c if you want to try yanking that
out and rebuilding.
Dana
On 11/9/17, 09:06
Hi Roel,
Note that it says "...to link statically to the CRT _in a DLL_ unless...".
> Yes, linking the CRT statically into a DLL that is meant for redistribution
> is a bad idea. HOWEVER, that doesn't mean that static linking per se is
> bad. Linking a whole program statically (including the CRT
Hi Roel,
On Mon, Jun 10, 2013 at 9:30 AM, Roel Vanhout wrote:
> **
> Hi,
>
> > This is not true. Even when each static library is built with the same
> > compiler at the same time and in the same Visual Studio solution. The
> reason
> > for this is that each static library is built as a separ
Hi all,
I stand corrected.
I just created a test project and inspected the assembler for the output
and it turns out that the CRT does share state when statically linked
together.
For example, this is what I get when I create a static library that calls
free via a library function:
foo_free:
Hi Nitya,
I'll take a look into this. It's a holiday weekend here, so I probably
won't get to this until next week.
Dana
On Mon, Jul 1, 2013 at 1:37 PM, Nitya Hariharan wrote:
> Hi,
>
> I am having some trouble reading in a HDF5 file that is ~5GB. I was
> initially having some problems even w
Hi Martijn,
Which compiler are you using?
On Sat, Jul 20, 2013 at 1:22 AM, Martijn Jasperse wrote:
> Hi all,
> I'm writing data-logging software storing in an HDF5 file, to be run for
> months at a time. I'm intending to use a chunked dataset, and append a row
> every time a measurement is mad
Hi Martijn,
I'm not so sure that your problem is in HDF5. I ran your program on
both 32-bit Linux and 64-bit Windows 7 w/ VS 2010 (I don't have a
32-bit Win7 VM) and I'm not seeing a memory leak (via Valgrind on
Linux and _CrtDumpMemoryLeaks() on Windows). In all cases, I used
HDF5 1.8.11.
As f
the larger concern I have is with file consistency
with a network interruption or failure.
[Dana Robinson] At this time, the HDF5 library does not support concurrent
access when a writer is involved. In the future HDF5 1.10.0 release (release
date: TBA), we plan to include a feature that will all
I second Sean's opinion in this matter. We should truly address the issue and
not paper over it by ignoring flags designed to suss it out.
Dana
> -Original Message-
> From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf
> Of Sean McBride
> Sent: Thursday, October 17,
Hi MIke,
Did you build the thread-safe version of the library? (i.e., configure with
--enable-threadsafe)
Dana
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
Cook, Michael J (GE Healthcare)
Sent: Friday, January 03, 2014 5:03 PM
To: hdf-forum@lists.hdfgroup.org
Sub
Hi Teo,
How long is your path?
Dana
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of Teo
Shaw
Sent: Monday, January 06, 2014 10:14 AM
To: hdf-forum@lists.hdfgroup.org
Subject: [Hdf-forum] Extended-length windows paths & H5Fcreate
Hi,
is there any support for the "\\?\
n Mon, Jan 6, 2014 at 3:57 PM, Dana Robinson
mailto:derob...@hdfgroup.org>> wrote:
Hi Teo,
How long is your path?
Dana
From: Hdf-forum
[mailto:hdf-forum-boun...@lists.hdfgroup.org<mailto:hdf-forum-boun...@lists.hdfgroup.org>]
On Behalf Of Teo Shaw
Sent: Monday, January 06, 2014
UNC paths (\\server\share ) do, in fact, work with HDF5. I gave it a quick
test this morning and server\\share works fine.
Dana
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of Dana
Robinson
Sent: Monday, January 06, 2014 12:42 PM
To: HDF Users Discussion List
issues.
1) Are winx86/x64 binaries available that have been built with the
H5_HAVE_THREADSAFE compile flags?
[Dana Robinson]
We do not supply thread-safe binaries. You'll have to build them yourself,
which is not that difficult to do with CMake + Visual Studio.
2) Any gotchas/tip
Hi Christoph,
Did the software crash while writing the file?
It looks like the file is missing an object header. Since we use a metadata
cache, this can happen if a program crashes while the cache contains unflushed
metadata. HDF5 is not (currently) journaled, so we don't order or group
metada
w to deal with
such situations.
Werner
On 24.03.2014 19:34, Dana Robinson wrote:
Hi all,
This is a brief RFC that outlines a new HDF5 API function, H5free_memory(),
which can be used to free memory returned from the HDF5 library (e.g., via
functions like H5Tget_member_name()). This wi
anup mechanism via a small peace of C++ code
where a global object's constructor/destructor does the same as what DllMain
would do in a dynamic library.
Werner
On 24.03.2014 19:41, Dana Robinson wrote:
Hi all,
This is another (very) brief RFC that outlines how we will address s
/FreePascal) it's next to
> impossible to properly free memory allocated inside the library. The
> document should probably mention this also.
[Dana Robinson]
I do mention this in section 4.3.
Dana
___
Hdf-forum is for HDF software
The point is to visually distinguish the function from free(). After all, if
the user uses H5free_memory() to free a buffer they allocated, then they have
the original problem, only reversed :)
The longer function name indicates that it is special and has a particular use.
Dana
> -Origina
even without the dllmain. I also
had the same thought but, frankly, I then thought that it would be easier to
hack the thing myself once you deliver it...
Cheers
-- ds
2014-03-25 15:06 GMT+01:00 Dana Robinson
mailto:derob...@hdfgroup.org>>:
This is a C library issue, so there are no construct
multi-threading issues in my
client app. A separate thread(s) was accessing the file through a different
fileid. I've reworked my thread synchronization and am preventing multiple
instances from getting created and all is looking good.
[Dana Robinson]
Are you using the thread-safe versi
Are you looking to do something like this?
http://www.hdfgroup.org/HDF5/doc/Advanced/DirectChunkWrite/UsingDirectChunkWrite.pdf
Dana
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of Jebb
Stewart - NOAA Affiliate
Sent: Tuesday, April 29, 2014 12:45 PM
To: daniel.k...@ss
Stewart
NOAA's Earth System Research Laboratory (ESRL)
Global Systems Division
325 Broadway, R/GSD6, Boulder, CO 80305
303-497-6724
On Tue, Apr 29, 2014 at 11:14 AM, Dana Robinson
mailto:derob...@hdfgroup.org>> wrote:
Are you looking to do something like this?
http://www.hdfgroup.org/HDF5/d
Hi Frederik,
The thread-safe library w/ the C++ wrappers is not a supported configuration.
This is enforced when built with the autotools, where --enable-unsupported must
be used if you want this combination. We've been slowly bringing CMake into
line with the more official autotools build opti
Hi Frederik,
> > The biggest potential problem is that the thread-safe locking
> > mechanism that we use does not extend into the C++ wrappers.
> > Addressing this is a fairly high-priority task for us. Pending funding,
> we'd like to get it into the library as soon as possible.
>
> This sounds a
Hi,
The HDF5 library does not support asynchronous I/O at this time. We are looking
into including async I/O support in a future release, however.
If you'd like to hurry this work along with financial support, there are people
here you should talk to :)
Dana
From: Hdf-forum [mailto:hdf-forum-
It builds and passes tests using the autotools on Yosemite. I seriously doubt
that CMake will make much of a difference.
My Mac does not have Fortran, so I did not test that.
Dana
> -Original Message-
> From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
> Michael
This is not necessarily true. Many people store this type of data in PyTables,
which is the backing store for Pandas and uses HDF5 internally.
I'm travelling today, but I'll provide a real response to this in a day or two.
Dana
> -Original Message-
> From: Hdf-forum [mailto:hdf-forum-bo
Hi Andrey,
There have been issues in the past with thread-local storage on Windows, but I
thought I had fixed those when I moved TLS setup and teardown to a DllMain
function in the library.
I'll create a JIRA issue for this and take another look during this release
cycle. One thing I did not d
For future reference, the JIRA ticket is HDFFV-9033.
> -Original Message-
> From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
> Dana Robinson
> Sent: Friday, November 28, 2014 8:17 PM
> To: HDF Users Discussion List
> Subject: Re: [Hdf-forum] Th
> Subject: Re: [Hdf-forum] Thread-safe hdf5.dll leaks memory
>
> 29.11.2014 4:16, Dana Robinson пишет:
> > I'll create a JIRA issue for this and take another look during this
> release cycle. One thing I did not do was test repeated load/unload from a
> managed environmen
someone has a compelling
use case.
Thanks,
Dana Robinson
Software Engineer
The HDF Group
___
Hdf-forum is for HDF software users discussion.
Hdf-forum@lists.hdfgroup.org
http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
Twitter: https://twitter.com/hdf5
Sorry, that should be --with-default-vfd=
Dana
> -Original Message-
> From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
> Dana Robinson
> Sent: Monday, January 26, 2015 6:33 AM
> To: HDF Users Discussion List (hdf-forum@lists.hdfgroup.org)
> S
Hi Roland,
The reason we don't support the higher-level "wrapper" libraries like C++,
Fortran, and the high-level (HL) library is that the global lock is at the C
API call level, not the wrapper level. Some of these wrapper API calls make
multiple C API calls and a context switch during the wra
Hi Roland,
Yes. Werner's clarification is correct.
Dana Robinson
Software Engineer
The HDF Group
> -Original Message-
> From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
> Roland Schwarz
> Sent: Thursday, February 12, 2015 2:01 A
The source code issues are fixed.
Dana Robinson
Software Developer
The HDF Group
> -Original Message-
> From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
> Baker, William L Jr CIV USARMY MEDCOM AISR (US)
> Sent: Wednesday, June 24, 2015 12:00 PM
>
Hi,
SWMR has not been tested on Windows. The existing SWMR test program is a shell
script that has not been converted to a scheme usable on Windows. We've also
not tested it on Cygwin or MinGW at this time.
I'd have to look more carefully at the code for the atomic test, but I would
not be sur
Hi,
Can you provide sample code that isolates the problem? I'd like to file a bug
report if there is an issue.
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum
mailto:hdf-forum-boun...@lists.hdfgroup.org>>
on behalf of Bo Zhou
mailto:bo.schwarzst...@gmail.com>&
e CRT, we don't support it. We disabled it due to potential
problems with memory being allocated in one statically linked CRT and freed in
another (e.g.: in plugins, user virtual file drivers, etc).
Dana Robinson
Software Engineer
The HDF Group
> -Original Message-
> From: Hdf-f
icated functionality such as
plugins and VFD. Can this still cause problems?
If yes, then this is a huge problem for me, because I need HDF5 to be
compatible with my other libraries. Please suggest a solution.
All the best,
Samer
On 7/20/2015 5:44 PM, Dana Robinson wrote:
Hi Samer,
A fully st
nto the higher-level
wrappers, but there's no immediate plans to do this. A sponsor with funding for
such a feature would obviously change the situation :)
Cheers,
Dana Robinson
Software Engineer
The HDF Group
-Original Message-
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.o
Whoops! Sorry! I read that as thread-safe, not parallel. It's early here and I
haven't made much progress on my coffee.
The lack of parallel and C++ being official supported is, I believe, due to a
lack of testing and not due to a particular bug or problem.
Dana Robinson
Software En
th parallel hdf : I would like to test if this may fix
this problem.
Franck
Le 2015-10-16 12:47, Dana Robinson a écrit :
> Whoops! Sorry! I read that as thread-safe, not parallel. It's early
> here and I haven't made much progress on my coffee.
>
> The lack of parallel a
hreads are used. With no dll, there are no
hooks.
Cheers,
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of David
Sent: Wednesday, November 4, 2015 3:49 PM
To: HDF Users Discussion List
Subject: [Hdf-forum] Building Static Threa
uild procedure to do it.
On Wed, Nov 4, 2015 at 12:54 PM, Dana Robinson
mailto:derob...@hdfgroup.org>> wrote:
Hi David,
Since you say "dll" I'm going to assume you are on Windows. Thread-safety is
not supported in static builds of HDF5 on Windows. The reason for this is that,
ing a Win32 equivalent.
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of David
Sent: Monday, November 16, 2015 12:46 PM
To: HDF Users Discussion List
Subject: [Hdf-forum] Multiply Opened Files
I found this in the reference m
DF5 1.10.0.
Thanks for your report! I'll post back on the forum with any changes we'll be
making but I probably won't get to it until the new year due to the holidays
and 1.10.0 alpha release coming up.
Cheers,
Dana Robinson
Software Developer
The HDF Group
From: Hdf-for
1.8 compatibility,
though, so keep that in mind.
https://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetLibverBounds
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
SOLTYS Radoslaw
Sent: Tuesday, January
I tried this a while back and I can get recent versions of HDF5 1.8 to build
using the latest MS MPI, but mpiexec seems to only be available on Windows
Server 2012 with the HPC pack installed. I haven't gotten around to setting up
a VM for that so I don't know if it works there or
ce to a structure that
has not been flushed from the cache yet, a reader will encounter problems when
it tries to read the not-on-disk-only-in-memory structure from the disk. One of
the key changes that SWMR makes under the hood is to order metadata flushes to
avoid this situation.
Dana Rob
systems (NFS, SMB/Windows file shares, etc.), however, do not
guarantee write ordering and are not supported under SWMR.
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
Ryland, Andrew
Sent: Wednesday, March 16, 2016 11:47 AM
To
s for building since the testing makes heavy use of shell
scripts, fork, etc. which are not available on Windows. I'll see if I can
#ifdef around the problem.
Dana Robinson
Software Engineer
The HDF Group
-Original Message-
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On
Hi Rob,
- I'm not sure what to make of the timezone struct. Can you send me the
src/H5pubconf.h that is generated by configure and your configure output? I'd
like to see what MinGW thinks you have.
- Those problematic files in tests were designed for POSIX and assume the
presence of fork(), pi
forum-boun...@lists.hdfgroup.org] On Behalf Of
sisyph...@optusnet.com.au
Sent: Friday, March 25, 2016 7:45 PM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] Release of HDF5-1.10.0-pre2
-Original Message-----
From: Dana Robinson
Sent: Saturday, March 26, 2016 12:34 AM
To: HDF Users Discu
riginal Message-
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
sisyph...@optusnet.com.au
Sent: Saturday, March 26, 2016 2:41 AM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] Release of HDF5-1.10.0-pre2
-----Original Message-
From: Dana Robinson
Sent: Sat
hange into 1.10.0, though, so it'll have to wait another revision.
Cheers,
Dana
-Original Message-
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of Dana
Robinson
Sent: Sunday, March 27, 2016 4:36 AM
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] Relea
I see that you have "Documents" in your jpeg library path. Are you building on
Windows via Cygwin or MinGW where the ~ expands into a path that contains
spaces? Moving the jpeg library to a location where the path has no spaces
might be something to try.
Dana Robinson
Software Engine
Hi Carl,
What file system are you testing on? Is it a network file system like NFS, AFS,
or SMB?
That test was added in HDF5 1.10.0 and tests single-writer/multiple-readers
(SWMR) functionality. Since that is a new feature for 1.10.0, the test is not a
part of the HDF5 1.8 release.
Dana
You defined H5_BUILD_AS_DYNAMIC, not BUILT.
Dana Robinson
Software Engineer
The HDF Group
-Original Message-
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of jeff
womble
Sent: Tuesday, April 26, 2016 10:08 PM
To: HDF Users Discussion List
Subject: Re: [Hdf
Hi Arindam,
Those warnings are generally harmless and you see them because we have
aggressive gcc warnings turned on by default. We are working to reduce them but
it'll probably be a while before they are gone.
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [mailto:hdf-
-time mechanism for disabling file locking implemented for HDF5 1.10.1.
Dana Robinson
Software Engineer
The HDF Group
-Original Message-
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
Elena Pourmal
Sent: Sunday, May 15, 2016 9:01 PM
To: HDF Users Discussion List
Su
t file systems, or
if the sysadmin changes their mind on a daily basis to enable or disable file
locking?
Werner
On 16.05.2016 18:03, Dana Robinson wrote:
> If a suitable way to lock files cannot be determined at configure time, a
> no-op function is substituted. This is c
configuration.
This file is already created in our release branches and tarballs, so you
normally don't need Perl to build from there.
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of Nico
Schlömer
Sent: Friday, May 27, 2
ASAP so hopefully you won't have to wait long for official
functionality that addresses your problem.
Dana Robinson
Software Engineer
The HDF Group
-Original Message-
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of Greg
Werner
Sent: Thurs
controlling the file
locking behavior.
This patch is not necessary for Win32 (non-Cygwin) Windows since a file
locking scheme was never implemented on that platform.
The patch can be applied by running 'patch -p0 < file-lock-removal.diff' in
the HDF5 source code directory.
Dana Robi
Hi Brendan,
There is a source patch for HDF5 1.10 that disables file locking located here:
<https://www.hdfgroup.org/HDF5/release/obtainsrc5110.html#patch>https://www.hdfgroup.org/HDF5/release/obtainsrc5110.html#patch
Does that solve your problem?
Dana Robinson
Software Engineer
The HDF
ld have to be done on our sustained
engineering budget, which gets lower priority than paid-for work.
And we're working on making a public bug tracker available. Hopefully that will
be available soon.
Cheers,
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [mailto
problem should
be available in HDF5 1.10.1, but in the meantime you can apply a source patch
found here:
https://www.hdfgroup.org/HDF5/release/obtainsrc5110.html#conf
under "Patch to Disable File Locking" at the bottom of the page.
Cheers,
Dana Robinson
Software Engineer
The HDF G
Hi Haijun,
If you are still getting a flock error, I'd be suspicious that you aren't
linking to the patched HDF5 library. The source patch completely removes flock
so you shouldn't be seeing file locking errors.
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [m
sets that up for you.
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
Prentice Bisbal
Sent: Friday, July 29, 2016 9:43 AM
To: hdf-forum@lists.hdfgroup.org
Subject: Re: [Hdf-forum] Error detected in HDF5 (1.10.0) thread 0:
!
Haijun Yu
At 2016-07-29 23:40:52, "Dana Robinson"
mailto:derob...@hdfgroup.org>> wrote:
Hi all,
The source patch removes all references to flock() so this error should not be
occurring, regardless of the permissions. If you are still seeing errors, I
suspect that you are linkin
F5 library."
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
Isaac Gerg
Sent: Friday, August 26, 2016 6:31 PM
To: hdf-forum@lists.hdfgroup.org
Subject: [Hdf-forum] HDF5 -- multithreading support or not?
Hi Folks,
I
rary."
To me, "generally" implies that h5close() is not guaranteed to be called in
exit() OR that its preferred by hdf library that the user calls H5close() right
before calling exit().
Thank you,
Isaac
On Mon, Aug 29, 2016 at 11:14 AM, Dana Robinson
mailto:derob...@hdfgroup
: [Hdf-forum] HDF5 -- multithreading support or not?
Interesting... I am using H5Fclose().
If 2 different threads call this function for the same file (but different file
handles), does HDF handle this?
On Mon, Aug 29, 2016 at 11:29 AM, Dana Robinson
mailto:derob...@hdfgroup.org>> wro
Hi Elvis,
Did you build your HDF5 library with thread-safety enabled (--enable-threadsafe
w/ configure)?
Dana Robinson
Software Engineer
The HDF Group
Get Outlook for Android<https://aka.ms/ghei36>
From: Elvis Stansvik
Sent: Thursday, September 22, 12:43
Subject: [Hdf-forum] Simply usi
e --enable-unsupported.
Thanks for the info!
Elvis
>
> Scot
>
>
>> On Sep 22, 2016, at 12:36 PM, Elvis Stansvik
>> wrote:
>>
>> 2016-09-22 19:23 GMT+02:00 Elvis Stansvik :
>>> 2016-09-22 19:17 GMT+02:00 Dana Robinson :
>>>> Hi Elvis,
>>
rch package with --enable-threadsafe
>> --enable-unsupported.
>>
>> Thanks for the info!
>>
>> Elvis
>>
>>> Scot
>>>
>>>
>>>> On Sep 22, 2016, at 12:36 PM, Elvis Stansvik
>>>> wrote:
>>>>
>>>> 2016
actually quite minimal.
Basically, you just have to initialize and clean up thread-local storage when
you attach and detach threads, respectively.
Cheers,
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
Werner Benger
Sent
work in windows for a hdf static?
Thank you all.
Just to be clear, is the native shared lib built with threadsafe?
On Tue, Oct 4, 2016 at 5:06 AM, Dana Robinson
mailto:derob...@hdfgroup.org>> wrote:
Hi all,
Werner is correct. You could build the thread-safe + static library with
ALLOW_
airly easy to implement.
Please let us know if you have any questions or concerns.
Dana Robinson
Software Engineer
The HDF Group
RFC - Disable File Locking in HDF5 1.10 - v3.docx
Description: RFC - Disable File Locking in HDF5 1.10 - v3.docx
___
Hdf-
Keep in mind that if you go with a variable-length type, the data cannot be
compressed so your file sizes will be larger.
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
Steven Walton
Sent: Monday, October 17, 2016 12:35
Hi Dimos,
What version of HDF5 are you using? Are you using H5Pset_libver_bounds() to set
a particular version of the file format (e.g.: H5F_LIBVER_LATEST)?
Can you reduce this to a small C program that demonstrates the problem?
Thanks,
Dana Robinson
Software Engineer
The HDF Group
From: Hdf
me know if that doesn't work for you and we can diagnose further.
Cheers,
Dana Robinson
Software Engineer
The HDF Group
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
Sjaardema, Gregory D
Sent: Thursday, December 8, 2016 3:23 PM
To: HDF Users Discussion List
in H5Dcreate2(): not a location ID
/
--
"A supercomputer is a device for turning compute-bound problems into I/O-bound
problems”
From: Hdf-forum
mailto:hdf-forum-boun...@lists.hdfgroup.org>>
on behalf of Dana Robinson
mailto:derob...@hdfgroup.org>>
Reply-To: HDF User
Hi Andrey,
I'll create an issue for this. We have a Windows layer that substitutes Win32
equivalents for some POSIX commands and it should be straightforward to use
SetEnvironmentVariable() on Windows.
Dana Robinson
Software Engineer
The HDF Group
-Original Message-
From: Hdf-
Oops. Sorry, I read this too quickly. I'll have to think more about your
problem. I will create an issue for this, though.
Dana
-Original Message-
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of
?? ?
Sent: Friday, March 3, 2017 3:43 AM
To: HDF User
--Original Message-
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org] On Behalf Of Dana
Robinson
Sent: 03 March 2017 15:58
To: HDF Users Discussion List
Subject: Re: [Hdf-forum] Setting plugin path programmatically
Hi Andrey,
I'll create an issue for this. We have a Win
Hi all,
Sorry I've missed most of this discussion, but HDF5 1.10.1 checks an
environment variable that you can use to disable file locking
(HDF5_USE_FILE_LOCKING). Setting this to "FALSE" disables all file lock calls.
Cheers,
Dana Robinson
Software Engineer
The HDF Group
On 4
on, Apr 3, 2017 at 5:14 PM, Dave Allured - NOAA Affiliate
mailto:dave.allu...@noaa.gov>> wrote:
Dana,
Is HDF5_USE_FILE_LOCKING applied at configure time, build time, or run time?
--Dave
On Mon, Apr 3, 2017 at 4:27 PM, Dana Robinson
mailto:derob...@hdfgroup.org>> wrote:
Hi all,
Sorry
ion that the OS
typically discards those freed pages easily when other processes need the
memory so you shouldn't be forced to go to the disk for swap space.
Dana Robinson
Software Engineer
The HDF Group
-Original Message-
From: Hdf-forum [mailto:hdf-forum-boun...@lists.hdfgroup.org]
Do you have MPI installed?
Dana Robinson
Software Developer
The HDF Group
From: Hdf-forum on behalf of Muhammad
ILYAS
Reply-To: HDF List
Date: Friday, June 16, 2017 at 11:06
To: HDF List
Subject: [Hdf-forum] compiling for the first time from source code
Hello,
This is my first attempt of
Hi all,
(I'm jumping in to the middle of this discussion while still on vacation, so
please excuse me if I'm missing something.)
Those documents describe cache flushing. Flush ordering should not affect the
file format – any transient 'file corruption' would be due to a second reader
inspectin
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