Bob,
I've got server issues. Suddenly, old files are showing up on the server. I
think there may have been some back-up server issues. I have a note in to my
provider.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Feb 11, 2013, at 10:41 AM, Robert Hanson wrote
an old
meta tag hanging around that was related to some MSIE problem I was having in
the past:
meta http-equiv=X-UA-Compatible content=IE=EmulateIE8 /
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Feb 9, 2013, at 11:10 PM, Robert Hanson wrote:
I experimented some
, a pseudo hover on iPad (touch-pause), but it's
of no use with JSmol other than the fact that to translate a selected model you
definitely need to touch-pause before you move it.
http://chemagic.com/modelkit/
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Feb 8, 2013
Actually, for mouse manipulation, hover is still alive on in this touch mode,
so mouse hover selects the model. With a mouse, you do not need to use the
links to select the models - at least on Safari.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Feb 9, 2013, at 8:20
the instruction
touch-pause-drag.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Feb 8, 2013, at 5:26 PM, Robert Hanson wrote:
I have a touchscreen Windows 8 machine that I got specifically for this
purpose. There are issues, primarily in that sometimes it starts firing BOTH
Quentin,
I'm not fully following your use of pipes, but I think one error is the
following:
sdf=sdf.replace(/\|/g,\n|);
I think you need //n not just /n.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Feb 7, 2013, at 11:31 AM, Quentin Delettre wrote:
Dear jmol user
Hi Paul and Quentin,
I think the real problem is
sdf=sdf.replace(/\|/g,\n|);
The above regular expression is replacing | with n|. To replace | with the \n|,
the expression needs to be:
sdf=sdf.replace(/\|/g,\\n|);
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Feb 7
/NCI Resolver, many IUPAC name2SDF are now calculated:
http://opsin.ch.cam.ac.uk
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
Begin forwarded message:
Hi Otis,
sorry for the late reply.
Three questions - quick ones, I think:
I'm putting together
David,
On InChI, SMILES, and most common IUPAC, the Resolver structure is calculated
by CATVS. Name is look-up.
http://www2.ccc.uni-erlangen.de/software/cactvs/whatis.html
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Feb 2, 2013, at 4:07 PM, N David Brown wrote
};color red;unbind single;bind single rotateSelected
axisangle {1 1 1 @{_DELTAX*1}}
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
--
Everyone hates slow websites. So do we.
Make your web apps faster
with a double binding, and I can
do the selective rotation with single binding. I'm trying to improve the
rotation script.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Feb 1, 2013, at 9:48 AM, Robert Hanson wrote:
is this rotation or spin? And what's so special about the iPad
the problem. I could look up the
context if it's useful, but your scenario comes close to what I was finding.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 30, 2013, at 1:09 PM, Robert Hanson wrote:
Firefox 18.0.1 is showing very odd behavior. I'm wondering
Bob,
The ability to load minimal with the possibility of expanding as needed would
be wonderful!
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 30, 2013, at 1:23 PM, Robert Hanson wrote:
I'm wondering if we should try to produce a really trimmed-down lite
clicking in a non-applet part
of the page:
if (nudgeTyp != ) { document.getElementById(script).blur();
document.getElementById(script).focus();
document.getElementById(script).blur(); }
Like I said. I thought is was a general applet issue.
Otis
--
Otis Rothenberger
o...@chemagic.com
http
Based on involved file dates, early November 2012.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 30, 2013, at 4:57 PM, Robert Hanson wrote:
Yes, that would be it, I think. I have filed a bug report with Bugzilla. For
how long have you observed this?
https
not. 1) It would be usable with (as opposed to IN) iBooks and eBooks
across a range of mobile devices. 2) You are not constrained by Apple's rules
and control. I, personally, really don't like the latter issues.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 24, 2013
on the other hand is useless.
iPad aside, I can't believe how easy it was to bring most of our virtual model
kit functionality from Jmol applet to JSmol.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 24, 2013, at 12:50 AM, Robert Hanson wrote:
isn't that called a double
way to
temporarily unbind LEFT alone so that it can be bound to the above script? If
not, do any other touch executions of the above come to mind?
I'm assuming above that LEFT alone would equate to touch-drag on the iPad.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
. It
works pretty well with a stylus. What fun.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 23, 2013, at 4:15 PM, Robert Hanson wrote:
you can certainly use
UNBIND LEFT
to unbind LEFT-CLICK.
On Wed, Jan 23, 2013 at 7:34 AM, Otis Rothenberger osrot
a JavaScript branch that depends on the FIND correlation
of the window model smiles with a smiles in memory.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
--
Master Visual Studio, SharePoint, SQL
OK,
My bad...
I found it. I have to quote dataSmiles for the Jmol script expression.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 19, 2013, at 9:58 AM, Otis Rothenberger wrote:
Bob,
If the dataSmiles exists at a JavaScript global, am I doing anything wrong
my mind said, Duh, it's a gif in Preview!
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 19, 2013, at 6:13 PM, Robert Hanson wrote:
hah -- my reply bounced because the image was somehow still in the reply.
OK, I've seen that error message before. I'm pretty sure
Bob,
The compare function is broken for identical models. I see the code at ~62069
in core.z.js, but I cannot spot the problem. The function seems to work for
everything but identical.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
- just like on my page.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 17, 2013, at 5:17 PM, Robert Hanson wrote:
is it broken in Jmol/Java as well?
On Thu, Jan 17, 2013 at 3:29 PM, Otis Rothenberger osrot...@chemagic.com
wrote:
Bob,
The compare function
Thanks Bob. Looks good.
I tried about 10 comparisons on my HTML5 page, and they were all correct.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 17, 2013, at 7:34 PM, Robert Hanson wrote:
found it! OK, that was very helpful, Otis. We now have full SMILES matching
to see if the script will complete.
Script: http://chemistry.illinoisstate.edu/osrothen/JSmol/j2s/j2sjmol.js:6479
The line is in the consoleOutput function.
2) Is it possible to create a switch for float vs double if that's the issue?
Otis
--
Otis Rothenberger
o...@chemagic.com
http
Thanks Nick,
I'm in Florida, CheMagic is in North Carolina, and ISU is in Illinois, so
that's not the problem.
This is frustrating. I just don't get it. Nevertheless, I guess I should put
13.1.12_dev on CheMagic just to make sure it's not a server issue.
Otis
--
Otis Rothenberger
o
Ah, that fix solves my problem also - ISU and CheMagic. Both servers are now
running the fixed version. Three seconds to mep on both servers. I'm happy,
Mickey is happy, and Minnie is happy.
Thanks, Bob
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
/osrothen/modelkit/
At first, I thought it was a cache issue, but I think it's something else. The
surface button followed by the mep link will show the difference.
My first thought is that it's a version problem. Could this also be a server
issue? Both are Windows servers.
Otis
--
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 15, 2013, at 7:02 PM, Robert Hanson wrote:
I made one significant change last night, making all numbers in Jmol doubles
instead of floats. Can you test this on the same server with
http://chemapps.stolaf.edu/jmol/jsmol.zip
://chemistry.illinoisstate.edu/osrothen/modelkit/
vs
http://chemagic.com/modelkit/
Speed of mep load via Surfaces Button then mep link.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 15, 2013, at 8:15 PM, Robert Hanson wrote:
I'm getting 10 seconds to mep
seconds, 3 seconds, 5 seconds
CheMagic
3 seconds
2-butanol second mep load
Windows FF
CheMagic
3 seconds
The ISU (newer vesion) is slower, but it appears to be a real problem on a Mac
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 15, 2013, at 8:15 PM, Robert Hanson
is REALLY long for the ISU server
on both Macs.
Do double precision numbers have any bandwidth issues that might cause an ISP
variable issue?
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 15, 2013, at 9:49 PM, Jeff Hansen wrote:
I didn't time it, but both sites similar
as a
model kit. I have the bad habit of changing web page file names, but the
directory link below will always point to the JSmol model kit page:
http://chemagic.com/modelkit/
Thanks again for making this transition possible, seemingly just in time.
Otis
--
Otis Rothenberger
o...@chemagic.com
Bob,
I get the basic flow of what's happening below, so I'll try. My JavaScript is
pretty primitive and chaotic, so you'll have considerable clean up to do!
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jan 11, 2013, at 10:47 AM, Robert Hanson wrote:
That will take
())).slice(-2);
mol += String(0 + (c.getMinutes())).slice(-2);
mol += 3D 1 1.0 0.0 0;
mol += \nJmol version + version + EXTRACT: ;
alert(mol);
}
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
to the world on my Mac.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
--
Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS,
MVC, Windows 8 Apps, JavaScript and much more. Keep your
. In this case, I cannot get the extracted molfile.
Does anything obvious come to mind on this error message?
I should mention that I am currently using pre model kit mode pick callback
code to replace atoms until I find the nature of this problem.
Otis
--
Otis Rothenberger
o...@chemagic.com
http
Bob,
In HTML5 JSmol, I see set picking DRAGSELECTED as working for translation, but
shift-drag zooms rather than rotates. This is on Mac FF, Chrome, and Safari.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
pretty well.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Dec 10, 2012, at 8:16 PM, Robert Hanson wrote:
you can turn off anything that is bound. Are we talking about HTML5? You can
just go into the JavaScript code in jsmol.js. I think you just have to have
Jmol
Bob,
Mac Safari, Chrome, and Firefox are OK.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Dec 10, 2012, at 7:22 AM, Robert Hanson wrote:
I'd appreciate people testing
http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 for those top
middle links involving
Paul,
That loads for me on Mac 10.7.5 with Chrome 23.0.1271.95.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Dec 10, 2012, at 7:58 AM, Paul Pillot wrote:
On Chrome MacOSX.6
no error with vasp.xml and water.xodydata.
estron.cml reports the following error
Paul,
You're right. I see that also with both of the other files.
If you load estron.cml first, everything seems OK - even going back to
estron.cml from one of the other files.
This is happening in Safari and Firefox also.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Mac Safari, I now get an error on either of the first two files if I load
the water.xodydata first. If I do not load this first, then playing with all
three links does not produce an error.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Dec 10, 2012, at 12:30 PM
Bob,
Is there a command to turn off (unbind) gestures other than finger drag? We're
trying some iPad stuff where we want only model rotation.
Otie
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
Ketcher in its own iframe. I also use absolute
positioning of all containers. This was probably asking for cross
browser/platform issues. I guess it could also affect response.
I'll keep working on it.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 30, 2012, at 8:11
Phil,
Good point. I just reduced its size to 680px. That appears to be the minimum.
I also removed some code that was in the page when I was trying to avoid the
iframe. That might have been causing some problems.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 30
I'll send it to you as an off list attachment when I get them combined.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 30, 2012, at 10:30 AM, Robert Hanson wrote:
It would be interesting to know more about those code collisions. We don't
want to have to use
response.
http://chemagic.com/ketcher/
It's under development, so there are probably bugs, but I think its great.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
--
Keep yourself connected to Go
is a quick way to see
if Resolver is up.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 29, 2012, at 5:32 PM, Robert Hanson wrote:
Ah, now you're talking! Let's get that connected to JSmol!
On Thu, Nov 29, 2012 at 12:40 PM, Otis Rothenberger osrot...@chemagic.com
Phil,
On Safari 6.0.2, I load the MO files. Are you using Safari?
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 28, 2012, at 12:46 PM, Robert Hanson wrote:
Do you think it's your browser?
On Wed, Nov 28, 2012 at 6:26 AM, Philip Bays pb...@saintmarys.edu wrote
!
I'll try other browsers on Mac to see if I see the problem there.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 28, 2012, at 2:04 PM, Philip Bays wrote:
Otis:
I am using Safari, Firefox, and Camino (with which I have never used for
JSmol until just now). I am
Phil,
My bad. I missed the MO HOMO SQUARED and MO DENSITY links. They are not loading
with Jmol or HTML5.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 28, 2012, at 3:01 PM, Otis Rothenberger wrote:
Phil,
In the Preferences/Advanced menu, check Show develop
Bob and Phil,
I think the relevant smol file is missing from this directory:
http://chemapps.stolaf.edu/jmol/jsmol/
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 28, 2012, at 3:30 PM, Otis Rothenberger wrote:
Phil,
My bad. I missed the MO HOMO SQUARED and MO
correct, why does it display in HTML5 mode?
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 28, 2012, at 4:53 PM, Robert Hanson wrote:
yes, of course! Try now. Note that the density one is not the sort of thing
to have on a web site -- this has to calculate
?
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 26, 2012, at 4:41 PM, Robert Hanson wrote:
On Mon, Nov 26, 2012 at 3:18 PM, Paul Pillot
paul.pil...@ac-orleans-tours.fr wrote:
So many improvements, it's hard to keep pace.
I've just (re)tried with an iPad
it to automatic optimize based on new SMILES after each edit, but it
works pretty quickly.
I'm working with a 450X450 canvas. I need to make the canvas larger for the
iPad. Even with that, it's going to work best with a stylus.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov
I also get the Firefox error in Safari 6.0.2. It occurs on the first load - not
on reload. After several cache clearing tests, the message always appears on
the first load after the cache clear - not on reloads. It's almost like a
reverse cache problem!
Otis
--
Otis Rothenberger
o
Oliver,
They sure do. I'm using both atom and bond pickCallBacks to produce model kit
actions.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 24, 2012, at 6:52 PM, Oliver Stueker wrote:
First of all: JSmol is a really GREAT idea and I am still stunned how
good
This now works on Mac Firefox 17.0 - very fast load even after cache is cleared.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 21, 2012, at 2:52 PM, Robert Hanson wrote:
thanks. This is a step I forget because it doesn't affect my browser. Those
are byte-order
an AJAX call to get CID first. With the CID, I can load the
SDF. Are you still making this initial CID call?
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
--
Monitor your physical, virtual and cloud
] = org.jmol.g3d.TextRenderer.translucency[p 5];
}
}
}
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 15, 2012, at 11:25 AM, Robert Hanson wrote:
Overnight I got an automatic Windows update; don't know if that is involved,
but I notice that this morning I can no longer troubleshoot JSmol
Thanks for the suggestion Angel, but no luck. I tried several variations of
position. The right zoom region is just expanding as I move the canvas position
to the right.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 14, 2012, at 11:04 AM, Angel Herráez wrote:
Hi
Bob,
If I am directing the page load toward HTML5 only, do I have any inherent
JavaScript model loaded notice (variable) available?
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
--
Monitor your
. This
instance runs at 100% CPU, and you cannot use Force Quit to get rid of it. I'm
curious if anyone else has seen this.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 12, 2012, at 5:59 AM, Philip Bays wrote:
Bob:
This is very nice!!
I note that on Mac Safari
seen the temperature problem since.
When I need to run Firefox, I keep touching my computer to make sure the
temperature is OK!
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 12, 2012, at 5:22 PM, Philip Bays wrote:
On Nov 12, 2012, at 5:19 PM, Philip Bays wrote
;
if (p != 0) {
this.tmap[i] = org.jmol.g3d.TextRenderer.translucency[p 5];
}
}
}
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 2, 2012, at 1:34 AM, Robert Hanson wrote:
How long does it take for the load, roughly, in seconds?
On Fri
Java on Mac Chrome. The new Java update pretty much eliminates this
possibility for Chrome.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 2, 2012, at 1:13 AM, Robert Hanson wrote:
OK, JSmol is loading from one core file now, with additional file loading
after repeated use of CTRL-[+] and
CTRL-[-]. Use View...reset and then it should be OK, and I believe I fixed
that anyway.
On Fri, Nov 2, 2012 at 7:46 AM, Otis Rothenberger osrot...@chemagic.com
wrote:
Bob,
Chrome Windows and Mac are about 7 seconds. Firefox Windows and Mac
] = Clazz.newArray (xargs, f);
}
return arr;
};
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 2, 2012, at 2:06 PM, Otis Rothenberger wrote:
Bob,
On both Mac and Windows, I cleared cache and rebooted. The FF problem
persists. Here's the Windows error log
with the first update attempt, but I think I checked Settings, and I don't
remember seeing it. The settings in the Java control seem ok.
Rebooted machine. Java now works in Safari.
Editorial Comment: Cripes!
Best, Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Oct 17
suggestion made at BCCE turned out to be important. There is also enough
information in the NIST compound page to ID the proper spectrum index. The
identifier route here is Jmol SMILES to Resolver CAS # to NIST Spectrum. It's
that simple.
Otis
--
Otis Rothenberger
o...@chemagic.com
http
I'm playing with CIF files for the first time myself. The radii are VdW, and
the following script components may be useful to you:
connect delete;spacefill IONIC 30%;label
Edit features in or out per your needs.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Sep 25
to download Java 7 for Mac OS X (10.7.3 and
above).
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Sep 4, 2012, at 2:39 PM, Rzepa Henry wrote:
On 4 Sep 2012, at 19:18, Oliver Stueker revilo2...@users.sourceforge.net
wrote:
Hi,
the security issues with Java 1.7 also
Bob,
Are Jmol SMILES internally unique?
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
--
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat
}.atomIndex.max + 1;t = {1.2}.atomIndex.min;select within(branch,
{atomIndex = k}, {atomIndex=t}); hide selected
But I don't know how to incorporate the frame index i into the expression.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
Angel,
Bingo! That works.
Thanks
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jul 13, 2012, at 2:51 PM, Angel Herráez wrote:
Otis,
maybe { model=i }
?
e.g. this works:
print {model=2}.atomindex.min
suggestions on this.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
--
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed
Bob,
On our end, this all started with a request from one of Tom's
colleagues. He's using the VMK in a service outreach lecture series to
discuss, among other things, how chemists know what molecules look
like. We thought it would be neat to be able to discuss this with a
series of edited
, but this is doable.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
--
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has
index= query.
At first, I though I could go directly to NIST with the InChI to parse the CAS
#. Unfortunately, such a query often returns an intervening options page that
has no CAS numbers.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jul 3, 2012, at 2:49 PM, Robert
compounds there for IR. We could almost
just catalog them. Maybe Markus can add them to the Resolver.
Do you need an introduction?
Bob
On Tue, Jul 3, 2012 at 2:07 PM, Otis Rothenberger
osrot...@chemagic.com mailto:osrot...@chemagic.com wrote:
Bob,
Almost, but not quite. ACS makes money
Just to close this issue:
I waited a few days to make sure the problem was fixed. It seems it was a proxy
server issue. I changed the FIrefox default of from auto detect proxy to no
proxy, and this seems to have solved the problem.
Thanks again...
Otis
--
Otis Rothenberger
o...@chemagic.com
my server. Did I understand Bob correctly? Is it
theoretically possible to hit Resolver directly via the JmolScript?
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jun 28, 2012, at 9:07 AM, Paul Pillot wrote:
Tried it twice today (morning and afternoon):
- first link
Jeff,
I'm reading the Resolver files as http, and I'm not messing with the headers.
It never bothered me because the load works, but maybe that's part of the
problem. Markus?
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jun 28, 2012, at 8:32 AM, Jeff Hansen wrote
appropriate addresses and give this a try. The main importance of your
feedback is that it shows that this is not a Resolver issue. It has to be a
local issue. Thanks again for the feedback.
Markus, thanks for looking into this.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
exclusively and only use other
browsers to check my scripting. I'll change the FF default on DNS prefetching
to see if this solves the problem.
Thanks again...
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jun 28, 2012, at 1:03 PM, Otis Rothenberger wrote:
All-
Thanks
with this note), would you forward this note to the ISU chemistry
faculty list?
Thanks in advance for any help. You'll either get the sdf of (R)-2-chlorobutane
or you'll timeout.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
. It
needed to be preceded by the blur(). The final blur() is inserted so subsequent
key pressing does not mess up my field contents. The net result is that after
an atom click, key capture is returned to the page.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jun 26, 2012
the page keystroke capture.
Clicking the page itself does not reinitiate the capture.
I suspect that this is a general applet issue. Is there any way within
JmolScript to reinitiate this page JavaScript behavior?
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
in the surface calculation
0 contour lines; separation = 0.14
isosurface1 created with cutoff=0.0; isosurface count: 1
isosurface full data range -0.08323054 to 0.08682171 with color scheme spanning
-0.07 to 0.07
Script completed
Jmol script terminated
--
Otis Rothenberger
o...@chemagic.com
http
)
at org.jmol.viewer.ScriptManager$ScriptQueueRunnable.runNextScript(Unknown
Source)
at org.jmol.viewer.ScriptManager$ScriptQueueRunnable.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Jun 21, 2012, at 10:44
Bob,
I'm in Tampa right now.I have the entire console report at home, and I'll
send it when I get back to Anna Maria Island. For what it's worth now, I'm
pretty sure that I was repeatedly clicking the Load ethane link on the VMK
Edit screen. I noticed the hang up when I clicked the MEP 100
. Things that cause this fatigue
have worked numerous times prior to the onset of a fatigue incident. I cannot
raise the Jmol console to look at history, however.
Does this sound like a Java memory issue? Does anyone else have experience with
applet fatigue?
Otis
--
Otis Rothenberger
o
will be returned. This latter point is
actually of some use in partial structure/name searches.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
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Bob,
That fixes the arrow problem. Thanks
Otis
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threat landscape has changed and how IT managers can respond.
Bob,
Lines (and curves) are draggable and arrows are not. Is this a correct
observation? I am seeing that while arrows do not actually move, the new arrow
position resulting from a drag attempt is reported in the console. Again is
this correct?
Otis
--
Otis Rothenberger
o...@chemagic.com
on the virtual model kit to make either XeHHYY, the
resulting SMILES does not reflect stereochemisty. If, however, you do the same
thing with deuterium, the stereochemisry IS reflected in the SMILES.
Bug or inherent behavior of H replace in modelkitmode?
Otis
--
Otis Rothenberger
o
Bob,
Is there a way to execute JmolScript that is in a string variable - i.e. an
eval function approach?
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
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Paul,
It doesn't look like an eval function, but it sure quacks like one. It's an
eval function!
That does the job for me. Thanks.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On May 17, 2012, at 2:16 PM, Paul Pillot wrote:
Have you tried this approach :
script
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