[Jmol-users] testing 11.6.RC8

2008-08-22 Thread Reichsman Frieda
Bob, 11.6.RC8 works fine for several of my web pages that use a variety of renderings, animations, echos, labels, centering commands, antialias toggle, spin, a looping script, and simple user-defined variables and functions. Fantastic! (...but not unexpected! :) Regarding syncing mouse

Re: [Jmol-users] Testing 11.6.RC8

2008-08-22 Thread Robert Hanson
found it -- Nico, let's get RC10 out so Dean can test it. Bob On Thu, Aug 21, 2008 at 11:21 PM, Dean Johnston [EMAIL PROTECTED]wrote: This (the write pointgroup draw command) still isn't working for me (RC9 and RC10). Not sure what is going on. Dean On Wed, Aug 20, 2008 at 2:18 AM,

Re: [Jmol-users] testing needed (point groups)

2008-08-22 Thread Robert Hanson
thanks -- RC9 is broken for pointgroups. (It can crash jmol when drawing) On Thu, Aug 21, 2008 at 11:22 AM, Xavier Prat-Resina [EMAIL PROTECTED]wrote: Bob, I finally had time to test the point groups in jmol. I used a set of structures included in Patchkovskii's code. They are not real

Re: [Jmol-users] Jmol-users Digest, Vol 27, Issue 24

2008-08-22 Thread Robert Hanson
oh, yes! You can do all that. Check the Jmol wiki for lots of tips. Commands include jmolEvaluate (my favorite), and jmolGetPropertyAsArray() or jmolGetPropertyAsString() On Thu, Aug 21, 2008 at 12:41 AM, Jeff Hansen [EMAIL PROTECTED] wrote: Thanks Bob. That certainly works. So basically

Re: [Jmol-users] a related popup window question....

2008-08-22 Thread Robert Hanson
You have total control over the popup characteristics -- it's your page! The only reason it's resizing is that you have percentages listed in the jmolApplet command, I think. Bob On Wed, Aug 20, 2008 at 4:30 PM, Thomas Stout [EMAIL PROTECTED]wrote: Yes: I've seen the users make the windows

Re: [Jmol-users] testing 11.6.RC8

2008-08-22 Thread Reichsman Frieda
Thanks Rolf, this URL should work: http://permaculture.gaiahost.coop/moleculesinmotion/aminoacids-sync/ Frieda On Aug 22, 2008, at 9:19 AM, Rolf Huehne wrote: Reichsman Frieda wrote: If you want to look at this, the page is here: http://moleculesinmotion.com/aminoacids-sync/ and the amino

[Jmol-users] set picking spin

2008-08-22 Thread rspinney
Set picking SPIN seems to be broken in 11.6-RC9 Rick Spinney - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK win great

Re: [Jmol-users] script in string

2008-08-22 Thread Matthew Zwier
If it's in the HTML page itself, wrapping the code in a CDATA section should help: script//![CDATA[ var loadJmol = script type='text/javascript'addJmol(molecule, divInc);/script; //]]/script Not sure on the compatibility factor for older browsers, but anything recent should digest it just fine.

Re: [Jmol-users] script in string

2008-08-22 Thread Robert Hanson
I guess I don't understand the context here. What is the addJmol command? Why is it being created as a script tag and not just as script addJmol() // whatever that may be /script Bob On Fri, Aug 22, 2008 at 2:22 PM, Matthew Zwier [EMAIL PROTECTED] wrote: If it's in the HTML page itself,

Re: [Jmol-users] set picking spin

2008-08-22 Thread Robert Hanson
That's fixed. Thanks. Also, now you can still make double-click measurements while you have set picking spin The double click will stop any current spinning that might be happening. Bob On Fri, Aug 22, 2008 at 12:21 PM, rspinney [EMAIL PROTECTED] wrote: Set picking SPIN seems to be

[Jmol-users] Jmol and MediaWiki Problem (jmolinitialize)

2008-08-22 Thread Stephen Weppner
Hi, I have installed the JMol Mediawiki extension found at: http://wiki.jmol.org:81/index.php/MediaWiki but it is not working, the Wiki says it is installed: http://academics.eckerd.edu/facultywiki/index.php/Special:Version but it does not work with even a simple example

Re: [Jmol-users] Jmol and MediaWiki Problem (jmolinitialize)

2008-08-22 Thread Robert Hanson
Steve, right -- it's simply a matter of the wiki not finding the path to Jmol.js. Nico or Angel can help you get that going. Bob Hanson On Fri, Aug 22, 2008 at 4:42 PM, Stephen Weppner [EMAIL PROTECTED]wrote: Hi, I have installed the JMol Mediawiki extension found at:

Re: [Jmol-users] Jmol and MediaWiki Problem (jmolinitialize)

2008-08-22 Thread Nicolas Vervelle
Hi, In the source of your test page, I see : script language='Javascript' type='text/javascript' src='/www/academics/facultywiki/extensions/Jmol/Jmol.js'/script But, when I try the URL corresponding to Jmol.js, I get a 404 Not found

Re: [Jmol-users] Testing 11.6.RC8

2008-08-22 Thread Dean Johnston
OK, it's working much better, but a few obscure errors with my test set (this is with both 11.6.RC10-applet, and 11.6.RC11_dev-application). *D2* (twistane): correctly identifies point group, but crashes on write pointgroup draw *D2h* (N2O4): correctly identifies point group, but crashes on write

[Jmol-users] Echo with sub and sup tags

2008-08-22 Thread Dean Johnston
I've just noticed an odd behavior with the echo command. I've been using sub (subscript) tags in some of my echos (I think this is an undocumented feature). At some recent point (after 11.4), any echo'ed text with a sub tag shows up with extra spaces between the letters. All other echos are

[Jmol-users] A little more javascript help please?

2008-08-22 Thread Jeff Hansen
I've posted a couple of questions in the past few days and several of you have given me some very good help that has put me in the right direction. Now let me give you a little background on what I'm trying to do. I'm working on learning javascript and the DOM and thought a good project

[Jmol-users] A little javascript help please? again

2008-08-22 Thread Jeff Hansen
Oops. Sorry I forgot the code. Here is the message again this time with the code. I've posted a couple of questions in the past few days and several of you have given me some very good help that has put me in the right direction. Now let me give you a little background on what I'm trying