Re: LaTeX warning explanation needed [RESOLVED]

2021-10-14 Thread Dr Eberhard Lisse
Rich, Good that it's working now. In large documents, I find it helpful to pull out every section into its own child document and have other than the ToC only Include statements generated by Insert --> File --> Child Document... in the main file. I then put my preamble into an

Re: LaTeX warning explanation needed [RESOLVED]

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Rich Shepard wrote: No differences in the two files in the copied sections, but the new one is 2K smaller in size. Nope. that file was mis-saved with a .lys suffix. Whatever that is. Both the original and copied files have the same size. Rich -- lyx-users mailing list

Re: LaTeX warning explanation needed [RESOLVED]

2021-10-14 Thread Rich Shepard
On Wed, 13 Oct 2021, Rich Shepard wrote: The document now compiles without error using TeXLive2021 (and the 2020 version of texlive-extra), but the bibliography still does not print in the PDF. I copied the main doc's .lyx to bit-by-bit.lyx and deleted everything but the title page and the

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Paul A. Rubin wrote: Just to be clear, is the attached log from the same MWE that we have (just references, nothing else) and does the MWE (with input encoding set to UTF-8) compile for you? The log seems to indicate that it does. Paul, The file, latex.log, is for the

Re: LaTeX warning explanation needed

2021-10-14 Thread Paul A. Rubin
On 10/14/21 4:21 PM, Rich Shepard wrote: On Thu, 14 Oct 2021, Rich Shepard wrote: I'll scroll through it, too. Latest latex.log: Package biblatex Info: Trying to load language 'english'... Package biblatex Info: ... file 'english.lbx' found.

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Rich Shepard wrote: I'll scroll through it, too. Latest latex.log: Package biblatex Info: Trying to load language 'english'... Package biblatex Info: ... file 'english.lbx' found. (/usr/share/texmf-dist/tex/latex/biblatex/lbx/english.lbx File: english.lbx 2019/12/01 v3.14

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Paul A. Rubin wrote: Just checked the modified MWE and confirmed that setting UTF-8 as the input encoding still fixes things. Paul, While the MWE might be working, the main document still does not have the bibliography with the Unicode (utf8) language setting. If it's

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Paul A. Rubin wrote: OK, after fixing the paragraph setting for the Van Doornik reference, I got the MWE to compile by doing the following: in Document > Settings... > Language > Encoding, I switched from Language default to "Other" and selected "Unicode (utf8)". Paul, I

Re: LaTeX warning explanation needed

2021-10-14 Thread Paul A. Rubin
On 10/14/21 2:27 PM, Rich Shepard wrote: On Thu, 14 Oct 2021, Paul A. Rubin wrote: Assuming your .bib file does not contain state secrets, how about the following? Create a new LyX doc (MWE) in which you just cite everything that gets cited in the actual document. We don't need headings,

Re: LaTeX warning explanation needed

2021-10-14 Thread Paul A. Rubin
On 10/14/21 2:27 PM, Rich Shepard wrote: On Thu, 14 Oct 2021, Paul A. Rubin wrote: Assuming your .bib file does not contain state secrets, how about the following? Create a new LyX doc (MWE) in which you just cite everything that gets cited in the actual document. We don't need headings,

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Paul A. Rubin wrote: The runaway string messages suggest that biblatex is choking on something in your reference file, but as I mentioned just now on the list, without the .bib file we can't diagnose anything specific. Note that copying from the .bib file and pasting into

Re: LaTeX warning explanation needed

2021-10-14 Thread Paul A. Rubin
On 10/14/21 2:27 PM, Rich Shepard wrote: On Thu, 14 Oct 2021, Paul A. Rubin wrote: Assuming your .bib file does not contain state secrets, how about the following? Create a new LyX doc (MWE) in which you just cite everything that gets cited in the actual document. We don't need headings,

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Rich Shepard wrote: Looks like the issue is with Keefer, et al. 2008. Here's the biblatex entry for that paper: @Article{Keefer2008, author = {Keefer, M.L. and Boggs, C.T. and Peery, C.A. and Caudill, C.C.}, journal = {North American Journal of Fisheries

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Paul A. Rubin wrote: Assuming your .bib file does not contain state secrets, how about the following? Create a new LyX doc (MWE) in which you just cite everything that gets cited in the actual document. We don't need headings, images, text etc., just the citations. Try

Re: LaTeX warning explanation needed

2021-10-14 Thread Paul A. Rubin
On 10/14/21 1:28 PM, Rich Shepard wrote: On Thu, 14 Oct 2021, Rich Shepard wrote: But after that I'm getting an error re-running pdflatex. It refers to a runaway argument in a text paragraph. Since this happened on the second run which has a bibliographic citation at the end the issue might

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Herbert Voss wrote: \texttt{foo here comes another text with paragraphs and so on The argument of \texttt is a "runaway argunent" , the closing } wasn't found. Herbert, Thank you. The jabrefdb has all key:value pairs for the citation at the end of that paragraph

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Rich Shepard wrote: But after that I'm getting an error re-running pdflatex. It refers to a runaway argument in a text paragraph. Since this happened on the second run which has a bibliographic citation at the end the issue might be with that entry in the database. Fixed

Re: LaTeX warning explanation needed

2021-10-14 Thread Herbert Voss
Am 14.10.21 um 18:55 schrieb Rich Shepard: On Thu, 14 Oct 2021, Axel Dessecker wrote: I'm aware what a warning is. This one explicitly tells you what to do: you have to "run Biber on the file biological-evaluation and rerun LaTeX afterwards‟. Biber's messages tend to be very helpful in

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Axel Dessecker wrote: I'm aware what a warning is. This one explicitly tells you what to do: you have to "run Biber on the file biological-evaluation and rerun LaTeX afterwards‟. Biber's messages tend to be very helpful in cases where you don't get the bibliography you

Re: LaTeX warning explanation needed

2021-10-14 Thread Herbert Voss
Am 14.10.21 um 17:47 schrieb Rich Shepard: On Thu, 14 Oct 2021, Axel Dessecker wrote: LaTeX Warning: There were undefined references. Package biblatex Warning: Please (re)run Biber on the file: (biblatex)    biological-evaluation (biblatex)    and rerun LaTeX

Re: LaTeX warning explanation needed

2021-10-14 Thread Axel Dessecker
Am Donnerstag, 14. Oktober 2021, 17:39:38 CEST schrieb Rich Shepard: > On Thu, 14 Oct 2021, Axel Dessecker wrote: > > starting from line 847 of your log file you find the following > > information: > > LaTeX Warning: There were undefined references. > > Package biblatex Warning: Please (re)run

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Axel Dessecker wrote: LaTeX Warning: There were undefined references. Package biblatex Warning: Please (re)run Biber on the file: (biblatex)biological-evaluation (biblatex)and rerun LaTeX afterwards. In the PWD are these files: $ ls

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard
On Thu, 14 Oct 2021, Axel Dessecker wrote: starting from line 847 of your log file you find the following information: LaTeX Warning: There were undefined references. Package biblatex Warning: Please (re)run Biber on the file: (biblatex)biological-evaluation (biblatex)

Re: LaTeX warning explanation needed

2021-10-14 Thread Dr Eberhard Lisse
LOG files don't help. MWE's do :-)-O el On 14/10/2021 00:47, Rich Shepard wrote: The document now compiles without error using TeXLive2021 (and the 2020 version of texlive-extra), but the bibliography still does not print in the PDF. The latex.log has these warnings: LaTeX Warning: Citation

Re: LaTeX warning explanation needed

2021-10-14 Thread Axel Dessecker
Am Donnerstag, 14. Oktober 2021, 01:16:53 CEST schrieb Rich Shepard: > On Wed, 13 Oct 2021, Paul A. Rubin wrote: > > The line numbers refer to lines in the .tex file being compiled, not lines > > in the .lyx file. The .tex file will be hiding in the temp directory LyX > > is using. > > Paul, > >

Re: LaTeX warning explanation needed

2021-10-13 Thread Rich Shepard
On Wed, 13 Oct 2021, Paul A. Rubin wrote: The line numbers refer to lines in the .tex file being compiled, not lines in the .lyx file. The .tex file will be hiding in the temp directory LyX is using. Paul, Well, that makes sense. The .tex file and it's other files seem to have vanished when

Re: LaTeX warning explanation needed

2021-10-13 Thread Paul A. Rubin
On 10/13/21 6:47 PM, Rich Shepard wrote: The document now compiles without error using TeXLive2021 (and the 2020 version of texlive-extra), but the bibliography still does not print in the PDF. The latex.log has these warnings: LaTeX Warning: Citation 'Groot1991' on page 4 undefined on input

LaTeX warning explanation needed

2021-10-13 Thread Rich Shepard
The document now compiles without error using TeXLive2021 (and the 2020 version of texlive-extra), but the bibliography still does not print in the PDF. The latex.log has these warnings: LaTeX Warning: Citation 'Groot1991' on page 4 undefined on input line 151. LaTeX Warning: Citation