[MORPHMET] trick for editing svg images from MorphoJ + reference about 2D/3D

2014-11-14 Thread andrea cardini
27;s more. Thanks in advance for any suggestion and/or pdf. Cheers Andrea Dr. Andrea Cardini Researcher in Animal Biology, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, l.go S. Eufemia 19, 41121 Modena, Italy Adjunct Associate Professor, Centr

[MORPHMET] estimates of (some) errors in geometric morphometrics

2015-01-16 Thread andrea cardini
issing the third dimension in geometric morphometrics: how to assess if 2D images really are a good proxy for 3D structures? Hystrix, in press. DOI:10.4404/hystrix-25.2-10993 http://www.italian-journal-of-mammalogy.it/article/view/10993/pdf_10993 (free and open access) Cheers Andrea

Re: [MORPHMET] between-group PCA

2015-02-06 Thread andrea cardini
Thanks in advance. -- MORPHMET may be accessed via its webpage at http://www.morphometrics.org To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org. Dr. Andrea Cardini Researcher in Animal Biology, Dipartimento di Scie

Re: [MORPHMET] CVA and Discriminant Analysis in Morpho J

2015-02-11 Thread andrea cardini
up and stop receiving emails from it, send an email to <mailto:morphmet+unsubscr...@morphometrics.org>morphmet+unsubscr...@morphometrics.org. Dr. Andrea Cardini Researcher in Animal Biology, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, l.go S. Eufemia 1

[MORPHMET] geometric morphometrics in Budapest

2015-06-09 Thread andrea cardini
Dear All, I was wondering whether there's anyone doing (or interested in) geometric morphometrics in Budapest. Thanks in advance for any answer. Cheers Andrea Dr. Andrea Cardini Researcher in Animal Biology, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e R

Re: [MORPHMET] Re: Why are Lollipop graphs unidirectional?

2015-08-04 Thread andrea cardini
<mailto:morphmet+unsubscr...@morphometrics.org>morphmet+unsubscr...@morphometrics.org. Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Profess

[MORPHMET] published dataset on invertebrates

2015-08-07 Thread andrea cardini
your help. Cheers Andrea Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, Centre for Forensic Science , The University of Western Aust

Re: [MORPHMET] phylogenetic signal

2015-10-29 Thread andrea cardini
phmet+unsubscr...@morphometrics.org>morphmet+unsubscr...@morphometrics.org. Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, Centre for

Re: [MORPHMET] 3D Shape Change Visualization

2015-12-14 Thread andrea cardini
ibe from this group and stop receiving emails from it, send an email to <mailto:morphmet+unsubscr...@morphometrics.org>morphmet+unsubscr...@morphometrics.org. Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 1

Re: [MORPHMET] 3D Shape Change Visualization

2015-12-15 Thread andrea cardini
unsubscr...@morphometrics.org. -- MORPHMET may be accessed via its webpage at <http://www.morphometrics.org>http://www.morphometrics.org --- You received this message because you are subscribed to the Google Groups "MORPHMET" group. To unsubscribe from this group and sto

Re: [MORPHMET] Sliding Semilandmarks

2016-02-18 Thread andrea cardini
andmarks. Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, Centre for Forensic Science , The University of Western Australia, 35 Stirling H

[MORPHMET] thanks

2016-02-19 Thread andrea cardini
estern Kentucky University 1906 College Heights Blvd. #11080Â Bowling Green, KY 42101-1080 Phone: 270-745-8765; Fax: 270-745-6856 Email: michael...@wku.edu On Feb 18, 2016, at 11:03 AM, andrea cardini wrote: Mike, does this mean that, in general, the position of the semilandmarks is strongly s

[MORPHMET] cranial size and body mass in felids

2016-03-03 Thread andrea cardini
Dear All, I'd be greatly very grateful for any suggestion on papers or web-pages with information on cranial size (length or other) and body mass in felids. References and/or pdf are most appreciated. Thanks a lot in advance. Cheers Andrea Dr. Andrea Cardini Researcher, Dipartimen

[MORPHMET] condylobasal length

2016-03-21 Thread andrea cardini
Hi All, a very simple question on a definition, please. Is there a univocal undisputed definition of condylobasal length? Or, are some researchers measuring slightly different things sometimes? Comments, pdfs or images are most welcome. Thanks in advance. Cheers Andrea -- Dr. Andrea

[MORPHMET] using regression residuals for other analyses

2016-03-24 Thread andrea cardini
ing of the methods see it. Thanks in advance. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, Centre for Forensic Sci

THANKS Re: [MORPHMET] using regression residuals for other analyses

2016-03-29 Thread andrea cardini
on! Cheers Ian dwor...@mcmaster.ca <mailto:dwor...@mcmaster.ca> -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, Centre for For

Re: [MORPHMET] Using Semilandmarks

2016-05-12 Thread andrea cardini
Ictiología 108B Ed 53 - 3208320 Ext 4127 -- MORPHMET may be accessed via its webpage at http://www.morphometrics.org --- You received this message because you are subscribed to the Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email

[MORPHMET] Morphoj with very large datasets

2016-05-27 Thread andrea cardini
mples. Probably this happened on the Linux side of my machine, which in fact is more powerful in terms of memory etc. than the Windows side. But possibly the OS is not really a factor. Thanks in advance for your feedback. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Sc

Re: [MORPHMET] symmetrizing data with bilateral symmetry

2016-07-05 Thread andrea cardini
et+unsubscr...@morphometrics.org <mailto:morphmet+unsubscr...@morphometrics.org>. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professo

[MORPHMET] geomorph and other packages in Linux Ubuntu

2016-07-19 Thread andrea cardini
r problems. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, School of Anatomy, Physiology and Human Biology, The Uni

Re: [MORPHMET] landmarking a translucent matching symmetry object (like flywings)

2016-07-28 Thread andrea cardini
top receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org <mailto:morphmet+unsubscr...@morphometrics.org>. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Moden

Re: [MORPHMET] comparing static, evolutionary, and ontogenetic allometry

2016-08-22 Thread andrea cardini
though the slopes remain statistically the same (tested using MANCOVA in GeoMorph). Thanks for any advice on how to compare these levels or if it even makes sense to compare ontogenetic allometry to either of the others. Christy - Christy Anna Hipsley Universi

[MORPHMET] papers on variance difference between sexes

2016-08-24 Thread andrea cardini
sexes or they found that one sex tends to vary more than the other. Thanks a lot in advance for your suggestions (and pdfs, if available!). Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103

[MORPHMET] working on just one side of skulls etc.

2016-09-12 Thread andrea cardini
other half by mirror reflection. Data and guidelines are provided as supplementary information. If someone is interested and can't download the papers, please do get in touch with me. They're not yet in my webpage. Cheers Andrea Cardini A. Lost in the other half: improving a

[MORPHMET] managed to install Morphologika in Linux

2016-10-21 Thread andrea cardini
oes not seem to work any more. Anyway, I just wanted to share this with the (probably few) people interested. By the way, with Morphologika I had troubles with the visualization in XP but that works wonderfully well in Linux. Have a nice weekend Andrea -- Dr. Andrea Cardini Researcher, Di

[MORPHMET] brain-body mass allometry in mammals

2016-11-04 Thread andrea cardini
Dear All, may I please ask you a suggestion on references? I am looking for a reasonably recent review on the allometric relationship between brain and body mass in mammals. Thanks in advance for your help, and my apologies for possible late answers. Cheers Andrea -- Dr. Andrea

[MORPHMET] geiger rescale error

2016-12-06 Thread andrea cardini
erced to type 'double' -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, School of Anatomy, Physiology and Human Biology, The Uni

[MORPHMET] problem fixed

2016-12-06 Thread andrea cardini
Thanks to Marko Djurakic for finding the problem with the geiger function, and to all others who answered with suggestions: the issue was that another package had a function with the same name. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche

brief comment on non-significance Re: [MORPHMET] procD.allometry with group inclusion

2016-12-11 Thread andrea cardini
"MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org <mailto:morphmet+unsubscr...@morphometrics.org>. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di

[MORPHMET] PC Scores From Other PCA in MorphoJ

2016-12-12 Thread andrea cardini
taset (non-averaged) onto the vectors from the imported matrix but can't do it with the mean shapes (which is my aim). I'll do it in NTSYSpc or R, but I'd be curious to understand what I am getting wrong in MorphoJ. Thanks in advance for any suggestion. Cheers Andrea -- Dr.

Re: brief comment on non-significance Re: [MORPHMET] procD.allometry with group inclusion

2016-12-12 Thread andrea cardini
tate.edu/%7Edcadams/> phone: 515-294-3834 *From:*Mike Collyer [mailto:mlcoll...@gmail.com] *Sent:* Monday, December 12, 2016 8:34 AM *To:* andrea cardini *Cc:* morphmet@morphometrics.org *Subject:* Re: brief comment on non-significance Re: [MORPHMET] procD.allometry with group inclusion Andrea,

[MORPHMET] comparative MA

2016-12-19 Thread andrea cardini
ed to SMA in smatr, and the difference is still there even if I use a star phylogeny in phytools, which should make phytools SMA identical to smatr SMA. Any suggestion, please, for a comparative MA including a test for slope? Many thanks in advance. Cheers Andrea -- Dr. Andrea Cardini Resea

[MORPHMET] TPS Series USERS: please, cite the correct ref.!

2017-01-03 Thread andrea cardini
pages = {9--12} doi = {10.4404/hystrix-26.1-11264}, url = {http://www.italian-journal-of-mammalogy.it/article/view/11264} } -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy te

Re: [MORPHMET] using intermediate landmarks between semilandmarks

2017-01-17 Thread andrea cardini
Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org <mailto:morphmet+unsubscr...@morphometrics.org>. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche,

Re: [MORPHMET] Re: number of landmarks and sample size

2017-05-31 Thread andrea cardini
cimens will generally reduce the power of statistical tests. There are ways to counter this issue (e.g., Q-mode approach recently proposed by Dean Adams). Now, concerning the sampling of bilateral landmarks, Andrea Cardini has recently written a nice pair of papers on the subject: Cardini, A.

Re: [MORPHMET] number of landmarks and sample size

2017-06-01 Thread andrea cardini
ET" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Moden

size will be missing Re: [MORPHMET] Save aligned in TPSRelW

2017-06-22 Thread andrea cardini
.morphometrics.org --- You received this message because you are subscribed to the Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org <mailto:morphmet+unsubscr...@morphometrics.org&g

Re: size will be missing Re: [MORPHMET] Save aligned in TPSRelW

2017-06-22 Thread andrea cardini
. So I think there is no error in having, for those data, CS slightly different (=larger) from 1 as they MUST have CS larger than 1 by construction. However,I'm not sure at 100% if TPSrelw works as I hypothesized here.. Playing a bit with TPSrelw could unveil this. All the best Paolo 2017-0

[MORPHMET] 1315 monkey skulls with 86 3D landmarks FREE DATASET + Wainer's Rule

2017-06-22 Thread andrea cardini
ks and downloads. I'd be also very happy to get some feedback on the 'Wainer's Rule', which in fact we don't know if it's a rule but hope it will be tested in more groups. Enjoy the data and, I hope, the paper! Cheers Andrea -- Dr. Andrea Cardini Re

Re: [MORPHMET] Troubles exporting data sets in MorphoJ

2017-06-29 Thread andrea cardini
http://www.morphometrics.org --- You received this message because you are subscribed to the Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org <mailto:morphmet+unsubscr...@morphometrics.org>. -

[MORPHMET] mirror-relabeling R function

2017-07-03 Thread andrea cardini
Dear All, please, is there an R function that I could use to mirror-relabel a 3D landmark configuration? Thanks in advance. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena

[MORPHMET] Re: PhD course on Bayesian stats

2017-09-12 Thread andrea cardini
/2017/bayesinpractice.pdf. Please feel free to share this information with anyone who might be interested in your labs. I hope all is well! Cheers, Daniele -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 -

ONLINE DATA Re: [MORPHMET] Your opinion + a tiny piece of your exotic data

2017-09-17 Thread andrea cardini
ed to the Google Groups "MORPHMET" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet+unsubscr...@morphometrics.org <mailto:morphmet+unsubscr...@morphometrics.org>. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e G

Re: [MORPHMET] Procrustes fit

2017-10-31 Thread andrea cardini
t like it and had an idea to check Procrustes coordinates in TPSRelw. In TPSRelw I used File-Save-Aligned specimens and got Procrustes coordinates, I hope. But... There is no correlation between PC in MorphoJ and TPSRelw. What is wrong in my actions? Thank you -- Dr. Andrea Cardini Researc

[MORPHMET] pairwise matrix of vector angles in R

2017-11-03 Thread andrea cardini
heers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2058472 Adjunct Associate Professor, School of Anatomy, Physiology and Human Biology, The University of We

[MORPHMET] error in landmarks from MRI

2017-11-08 Thread andrea cardini
Dear All, I'd greatly appreciate references on measurement error in landmarks from MRI data. It does not matter if it's 2D or 3D as long as it is specific to MRI. Thanks in advance. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche,

[MORPHMET] FOR EARLY POST-DOCS Fwd: [dzg-evol] Berlin, Germany: College for Life Sciences Fellowships

2017-12-05 Thread andrea cardini
Dear all, this is not strictly morphometric but it could be on a morphometric project and looks like a wonderful opportunity for early post-docs. I've asked a few more details about eligibility. Here they are: "The program is open to all nationalities and there is no particular age limit howe

Re: [MORPHMET] Re: Digitizing landmarks on live larvae

2018-03-14 Thread andrea cardini
st/measure and the effect size you expect. Andrea Cardini has some papers that can give you some hint on this, such as: Cardini & Elton 2007 - Zoomorphology Cardini et al. 2015 - Zoomorphology Cardini & Elton 2017 - Hystrix They should be downloadable from his website https:/

[MORPHMET] false positives in integration/modularity after Procrustes

2018-10-22 Thread andrea cardini
, and that issues might be even more serious using some of the most common methods for handling the increasing popular semilandmark data used to analyse 2D outlines and 3D surfaces. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio E

Re: [MORPHMET] Re: semilandmarks in biology

2018-11-07 Thread andrea cardini
oise (multivariate random normally distributed numbers added to a mean > shape). > > > > All the best > > > > Andrea > > > > 9 LANDMARKS PLUS 22 SLID SEMILANDMARKS > >

[MORPHMET] homology function; isotropy

2018-12-06 Thread andrea cardini
hem to the list, feel free to reply to me personally: I won't share answers sent directly to me without asking. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel.

[MORPHMET] new paper: elephant seal nose-metrics

2019-03-18 Thread andrea cardini
modularity tests. Please, write me if you have no subscription and need the pdf, as it's not yet in my webpage. Cheers Andrea -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0

not exactlyRe: [MORPHMET] PREPRINT: between-group principal components analysis (bgPCA)

2019-05-14 Thread andrea cardini
in, not my discovery: it's all in the introductory stats textbook, but I myself too often forget about it. -- Dr. Andrea Cardini Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy tel. 0039 059 2

[MORPHMET] thanks for support

2019-05-16 Thread andrea cardini
clarifying this. You are one of the most honest and modest people I know, and I am glad that your side of this story is now in the open. You have my support, as always. Una On Wed, 15 May 2019, 06:33 andrea cardini, <mailto:alcard...@gmail.com>> wrote: I have to correct Fred

[MORPHMET] sampling error references

2014-09-01 Thread andrea cardini
pdfs), they're much appreciated. Thanks in advance. Cheers Andrea Dr. Andrea Cardini Researcher in Animal Biology, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, l.go S. Eufemia 19, 41121 Modena, Italy Adjunct Associate Professor, Centre for Fore

[MORPHMET] sampling error references

2014-09-02 Thread andrea cardini
pdfs), they're much appreciated. Thanks in advance. Cheers Andrea Dr. Andrea Cardini Researcher in Animal Biology, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, l.go S. Eufemia 19, 41121 Modena, Italy Adjunct Associate Professor, Centre for Fore