Re: [Mzmine-devel] 2D plot

2011-12-12 Thread Gözde Gürdeniz
Hi Tomas, I did not use Savitzky-Golay algorithm. Cheers, Gözde M. Sc, PhD-student Gözde Gürdeniz, Group of Preventive Nutrition, Department of Human Nutrition, University of Copenhagen, Rolighedsvej 30, DK-1958 Frederiksberg Copenhagen-Denmark E-mail: g...@life.ku.dk Cell Phone: (+4

Re: [Mzmine-devel] 2D plot

2011-12-02 Thread Tomas Pluskal
Hi Gozde, Did you use the Savitzky-Golay deconvolution algorithm to produce your peak list? The strange 2D plot could be caused by additional zero m/z data points inserted due to a bug in the Savitzky-Golay algorithm (see one of the previous messages in the mailing list). I have now fixed the b

Re: [Mzmine-devel] 2D plot

2011-10-19 Thread Tomas Pluskal
Hi Gözde, Did you perform peak detection again using MZmine 2.3, or did you just open your old project? If you just opened your old project, the problem may still be there, because the old data will include the additional zero data point, as I explained in my last email. Try running peak detect

Re: [Mzmine-devel] 2D plot

2011-05-13 Thread Tomas Pluskal
Hi Gözde, Yes you are right, that looks strange. Can you send a sample file and exact parameters you used for peak detection? I will take a look at it. Tomas On May 13, 2011, at 5:03 PM, Gözde Gürdeniz wrote: > Hello > > After applying peak detection and deconvolution in MZmine 2.2, I am tr