Hi Gozde,

Did you use the Savitzky-Golay deconvolution algorithm to produce your peak 
list?
The strange 2D plot could be caused by additional zero m/z data points inserted 
due to a bug in the Savitzky-Golay algorithm (see one of the previous messages 
in the mailing list).
I have now fixed the bug, so if this was the cause, it may fix the 2D plot as 
well.

Cheers,

Tomas


On Nov 17, 2011, at 7:38 PM, Gözde Gürdeniz wrote:

> Hi Tomas
>  
> Sorry for late reply.
> I didn’t use the old project. It is kind of strange that we are the only ones 
> that are experiencing this problem.
>  We have installed MZmine in different computers and it is always the same 
> problem.
> I know it doesn’t make so much sense but I am still thinking that it may be 
> related with this ‘set automatically’ button in 2D plot window.  
>  
> Thanks in advance.
>  
> Kinds
> Gözde
> ------------------------------------------------------------------------------
> All the data continuously generated in your IT infrastructure 
> contains a definitive record of customers, application performance, 
> security threats, fraudulent activity, and more. Splunk takes this 
> data and makes sense of it. IT sense. And common sense.
> http://p.sf.net/sfu/splunk-novd2d_______________________________________________
> Mzmine-devel mailing list
> Mzmine-devel@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/mzmine-devel

===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
TEL:  +81-98-966-8684

------------------------------------------------------------------------------
All the data continuously generated in your IT infrastructure 
contains a definitive record of customers, application performance, 
security threats, fraudulent activity, and more. Splunk takes this 
data and makes sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-novd2d
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