[OpenMOLE-users] Migration to discourse

Dear OpenMOLErs, the new OpenMOLE forum is ready ! You can enjoy this new wondeful discourse based communication medium at this address: http://ask.openmole.org. This mailing list will be retiered after having fairly served the community during so many years. Please migrate to the new forum

Re: [OpenMOLE-users] Details on calibrating a model with NSGA2

Hi Helene, Le 01/06/2017 à 14:50, Hélène Arduin a écrit : > Hi, > > Thank you Alberto for the explanation! > > Anyone on the parallelism parameter? I don't understand if the > parallel generations are drawn simultaneously, computed and then > regrouped before moving to the next ones, or if they

Re: [OpenMOLE-users] netlogo6 task problem with default extensions - like csv-

It might be cause by a change in netlogo 6 in the way it manages extensions in headless. Can you check the doc of netlogo on this point ? Can you run your model using the headless mode of netlogo directly? Romain Le 15/05/2017 à 15:14, reyman a écrit : > Hi, > > I'm trying to use a

Re: [OpenMOLE-users] Impossible to load a model File with dev version

workDirectory / "*voronoi.gaml"* > * > * > This second (working) path is not very user friendly IMHO, because > *voronoi.gaml* is into *voronoi* folder > > 2017-04-18 16:29 GMT+02:00 Romain Reuillon <romain.reuil...@iscpif.fr > <mailto:romain.reuil...@iscpif.fr>

Re: [OpenMOLE-users] Impossible to load a model File with dev version

Didn't you forget the workDirectory / "*voronoi/voronoi.gaml" *? Romain Le 18/04/2017 à 12:40, sebastien rey coyrehourcq a écrit : > Hi, > > With Renaud we have some difficulties to load a simple gama model with > latest build of OpenMole. > > The model exist into the folder

Re: [OpenMOLE-users] Simulation Optimization

Hi Omar, yes openmole is exactly the tool you need. To start I would recomend downloading the application a going to the maket place (within the application) and getting the "hello world in java" example. If you're using linux or mac I would recomend that you use the soon-to-be-realeased version

Re: [OpenMOLE-users] - ERROR 500 - on EGI grid

The error 500 was not exactly the pb, but there was a pb on DIRAC for the VO. It has just been fixed. Does it work for you? Le 13/01/2017 à 17:27, sebastien rey coyrehourcq a écrit : > Hi, > > With 6.1 openmole tagged version, job are submitted on the grid but > gridscale return error 500

Re: [OpenMOLE-users] Compilation error with npm

Installed on zeb. Romain (still in vacation ;)) Le 05/01/2017 à 16:11, sebastien rey coyrehourcq a écrit : > :( yeah it's possible, rsync power.. :) > > > --- > Sébastien Rey Coyrehourcq > Research Engineer, BAP E, UMR IDEES > Sent from Nylas N1 , the extensible,

Re: [OpenMOLE-users] Dirac is dead ?

The fie at the url http://dirac.france-grilles.fr/defaults/DiracServices.json return a 404 error. I asked the DIRAC team why it disapeared Le 18/12/2016 à 16:52, reyman a écrit : > Hi guys, > > Is there some problem with DIRAC /EU GRID actually for you ? > > java.io.IOException: Server

Re: [OpenMOLE-users] csvfile sampling in directorder

ampling" , I guess there is some randomness at > some point > > 2016-12-01 20:27 GMT+01:00 Romain Reuillon <romain.reuil...@iscpif.fr > <mailto:romain.reuil...@iscpif.fr>>: > > Hi Paul, > > I don't get what you want. The sampling here assing o

Re: [OpenMOLE-users] csvfile sampling in directorder

Hi Paul, I don't get what you want. The sampling here assing one seed for each line in the csv file. Therefor the subsequent task will be executed once for each line. What do you want to achive? Romain Le 01/12/2016 à 17:46, paul chapron a écrit : > Hi fellow users , > > > I have replication

Re: [OpenMOLE-users] How-to for documentation on github/site ?

Yes, the most cumbersome is to writte the content so either you can add it directly in scalatex in the site project of openmole if you feel like it. Otherwise provide a markdown file and we can integrate it. Le 26/11/2016 à 13:16, Jonathan Passerat-Palmbach a écrit : > > Hi Seb, > > I guess we

Re: [OpenMOLE-users] About env for multiple chained task on grid node ?

It mean that you have an ulimit set tow low. Can you send the result of ulimit -a ? Le 25/11/2016 à 21:37, reyman a écrit : > I precise, this error only happen with EGI environnement and not with > LocalEnvironnement. > And this error crash openmole in terminal. > > 2016-11-25 21:28 GMT+01:00

Re: [OpenMOLE-users] Question about sampling

s for method apply: > ()org.openmole.core.dsl.Val[Array[Long]] in trait ReferenceWrapper > s := seeds(0),/ > > Cheers, > > > --- > Sébastien Rey Coyrehourcq > Research Engineer, BAP E, UMR IDEES > Sent from Nylas N1 <https://nylas.com/n1?ref=n1>,

[OpenMOLE-users] demo site

Dear OpenMOLErs, we are very pleased to introduce our brand new demo site: http://demo.openmole.org. It feature a fully functional instance of OpenMOLE. There is still some rough corners but illustrates how OpenMOLE works without the need to install it. This OpenMOLE instance is wiped out every 2

Re: [OpenMOLE-users] Question about sampling

Hi Seb, this works: > val seeds = Val[Array[Long]] > val tremble = Val[Double] > > val exploration = > ExplorationTask( > (tremble in (0.0 to 1.0 by 0.20)) zip > (seeds in (UniformDistribution[Long]().sliding(4, 4))) > ) > > > val model = > EmptyTask() set ( > inputs +=

Re: [OpenMOLE-users] [OpenMOLE-devs] The new OpenMOLE is Mostly Magic

; > at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308) > > at java.lang.ClassLoader.loadClass(ClassLoader.java:357) > > at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:482) > > > 2016-11-19 13:46 GMT+01:00 Romain Reuillon <romain.reuil...@iscpif.fr > <mailto:romain.reuil

[OpenMOLE-users] The new OpenMOLE is Mostly Magic

Long time, no release! More than a year! The OpenMOLE team is very proud to disclose "Mostly Magic", the 6th major version of OpenMOLE. As a reminder OpenMOLE (not very usefull for you it might be of use if you want to forward the mail to all your friends and familly :)) is a software for

Re: [OpenMOLE-users] Memory on grid node ?

Don't reduce the memory used by openmole. The memory used by openmole is the same as the one use by gama (that's the memory allocated to the JVM). By default it is set to 1024 megs, make it 2048. Romain Le 13/11/2016 à 17:02, reyman a écrit : > Hi guys, > > It seems the gama model i try to run

[OpenMOLE-users] Remove ivy cache

Hello, if you compile OpenMOLE from the sources you should remove the ivy cache for the compilation to produce an operational openmole: rm -rf ~/.ivy/cache/org.openmole The ivy cache prevented the libraries from any update. A snapshot flag has been set on the libraries which fixes this problem,

Re: [OpenMOLE-users] GAMA plugin

gt; Melissa > > On Thu, Sep 15, 2016 at 4:29 PM, Romain Reuillon > <romain.reuil...@iscpif.fr <mailto:romain.reuil...@iscpif.fr>> wrote: > > The pb is here, it should be: exploration -< (gama hook > ToStringHook()) > > --- > > (FYI Ther

Re: [OpenMOLE-users] Size of file on node ?

OpenMOLE compresses file on the fly while transfering them, Romain Le 15/09/2016 à 14:06, reyman a écrit : > Hi all, > > For our model we need a big matrix of 1.5 Go which contain shortest > path for a big road graph. > > If we compress, the size fall at 20Mo... > > So my question is, is there a

Re: [OpenMOLE-users] Master/Slave code example

Great ! Le 05/09/2016 à 11:12, Melissa Saeland a écrit : > Okay, I think I have got it. Changed to "archive.size >= 10", and it > seems to work now. > > On Mon, Sep 5, 2016 at 10:03 AM, Melissa Saeland > > wrote: > > Hi, > > I am

Re: [OpenMOLE-users] GAMA plugin

Seb works on the gama plugin compilation. Seb any news from there? I tried to launch the branch which fetched the bundles from the eclipse update site but I get an error when starting sbt Romain Le 02/09/2016 à 09:57, Romain lardy a écrit : > > Hi Melissa, > > In the case you don’t find a

Re: [OpenMOLE-users] Error netlogo on R with RNetLogo

: >> next.openmole.org >> Le 21/07/2016 à 12:18, Delay Etienne a écrit : >>> Is there some binary for the last version of Openmole ? >>> >>> E. >>> >>> Le 21/07/2016 à 11:31, Romain Reuillon a écrit : >>>> In the listing window y

Re: [OpenMOLE-users] Error netlogo on R with RNetLogo

n$perform$1.apply(Task.scala:59) > at > org.openmole.core.workflow.task.Task$$anonfun$perform$1.apply(Task.scala:59) > at > org.openmole.core.workflow.tools.InputOutputCheck$class.perform(InputOutputCheck.scala:91) > ... 12 more > > > Le 21/07/2016 à 10:46, Romain Reuillon a écrit : >> Hi Etienne

Re: [OpenMOLE-users] Error netlogo on R with RNetLogo

logo.tar.gz.bin R --slave -f netlogo_run.R --args 4 >> >> But it doesn't take care of files in >> /home/delaye/github/projet42/nlogo/data/maps_space/ >> >> >> >> - from which directory are you running this command

Re: [OpenMOLE-users] Error netlogo on R with RNetLogo

Hi Etienne, do you manage to reexecute you CARE archive outside of openmole ? You may try it by running ./carearchivename.tgz.bin Romain Le 19/07/2016 à 15:00, Delay Etienne a écrit : > After some investigation ... It seems to be care my problem ... > > OpenMole said :

Re: [OpenMOLE-users] Running OM in headless mode

un$1$$anonfun$apply$1.apply(LocalExecutor.scala:64) > at scala.collection.immutable.List.foreach(List.scala:381) > at > org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1.apply(LocalExecutor.scala:64) > at > org.openmole.core.workflow.execution.local.LocalExecutor$$an

Re: [OpenMOLE-users] Running OM in headless mode

veMethodAccessorImpl.java:57) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at java.lang.reflect.Method.invoke(Method.java:601) > at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:629) > at org.eclipse.equinox.launcher.Main

Re: [OpenMOLE-users] Error with EGIEnvironment("vo.complex-systems.eu")

Hi Juhui, the address of the VOMS has changed. OpenMOLE updates in on regular basis, if you want to force the update you should remove the file: ~/.openmole/youmachine/voCards.xml* Please also update to the 5.6 version, there was a blocking bug in the grid access in the 5.5. Romain PS: I will

[OpenMOLE-users] Tutorials

Hi, 2 OpenMOLE tutorials are now available on the market. It is already on github: https://github.com/openmole/openmole-market/tree/6-dev/tutorials and on next: http://next.openmole.org/Documentation_Market%20Place_Tutorial.html These tutorials work with the current stable version and will be

Re: [OpenMOLE-users] data channel ?

], res=[196.0, 196.0]} {i=[97.0, 97.0], res=[194.0, 194.0]} {i=[96.0, 96.0], res=[192.0, 192.0]} {i=[95.0, 95.0], res=[190.0, 190.0]} {i=[94.0, 94.0], res=[188.0, 188.0]} ... Le 20/06/2015 19:43, Romain Reuillon a écrit : Do you mean that you want to have un number of experiment in you csv file? I

Re: [OpenMOLE-users] Using the desktop grid with Windows 7

Actually it seem to have a bug in the dev version of the daemon right now, I am fixing it... Le 13/06/2015 13:31, Romain Reuillon a écrit : Hi Bob, could you post your netlogo.txt script? Also, for the desktop grid I advise you to use the dev version of OpenMOLE, since I am not sure the one

Re: [OpenMOLE-users] How to profile/monitor job queue

Hi Andreas, we have no workflow profiling tools for now. That would be very interesting and should definitelly be a feature of the workflow development environment we are building. My guess is that your short jobs are being slown down either by the overhead of the submission process or by

Re: [OpenMOLE-users] How to fix aggregation - ambiguity

Hi Andrea, the generalized notation for transition using when was not implemented for Exploration and Aggreagtion transition. The commit b6d6fe420c22f33f0b38644195f7efaaeac8d3eb fixed it. Could you test it? Cheers, Romain Le 18/05/2015 14:42, Andreas Schuh a écrit : Hi, the following are

Re: [OpenMOLE-users] Limit number of jobs in queue

Hi Andrea, no, but why would you do that ? Romain Le 12/05/2015 10:27, Andreas Schuh a écrit : Hi, is it possible to limit the number of jobs submitted to the SLURM/Condor/PBS queue at a time ? Andreas ___ OpenMOLE-users mailing list

Re: [OpenMOLE-users] Task skipped when using strainer capsules

Hi Andreas, it is hard to diagnose with such a massive workflow. Could you reproduce this behaviour with a minimalist one? Romain Le 07/05/2015 20:26, Andreas Schuh a écrit : Hi, I have the following linked workflow in my REPEAT plugin, where the puzzle of interest at the moment is