Re: [PyMOL] PovRay

Hi Ian, As this may be of broader interest, I forward it to the pymol user list too. You can clip the scene using an intersection. Let's say that you have the object you want to clip stored as a povray include file "object.inc". Then you can get the clipped object as: //### pymol_object = union

Re: [PyMOL] POVRAY Usage

ject: Re: [PyMOL] POVRAY Usage Hi Tom, Just as Robert says, the quote should be dropped. Maybe you should've had just one coffee more, but I should also have been more careful typing. Apparently I usually automatically start of with typing strings after .write( ;) Sorry about that. Tsjer

Re: [PyMOL] POVRAY Usage

at would be more obvious if I had had more coffee > today? > > Thanks! > -Tom > > PS - There was a missing quotation mark: > open("povray.inc","w").write("cmd.get_povray()[1]) --> > open("povray.inc","w").write("cmd.get_povray()[1]"

Re: [PyMOL] POVRAY Usage

Hi Tom On Fri, 15 May 2009 14:57:36 -0700, Thomas Stout wrote: > What version of PyMOL does this work with? I've been trying your commands > with versions 1.1 and 1.2b and while PyMOL reports that the primitives have > been processed, nothing is written to the file "protein.pov" other than the

Re: [PyMOL] POVRAY Usage

.write("cmd.get_povray()[1]) --> open("povray.inc","w").write("cmd.get_povray()[1]") -Original Message- From: Tsjerk Wassenaar [mailto:tsje...@gmail.com] Sent: Thu 5/14/2009 1:47 PM To: Sean Law Cc: pymol-users Subject: Re: [PyMOL] POVRAY Usage Hi Sean, Unfortun

Re: [PyMOL] POVRAY Usage

uld be two axis vectors (according to the povray website) but you've only > specified one.  Should I just repeat the same axis twice? > > Sean > > >> Date: Thu, 14 May 2009 22:47:54 +0200 >> Subject: Re: [PyMOL] POVRAY Usage >> From: tsje...@gmail.com >> T

Re: [PyMOL] POVRAY Usage

Hi Sean, Unfortunately, getting a good image through POV-Ray requires editing the POV-Ray file. You can write the scene to disk with the following commands pov=open("protein.pov","w") pov.write(cmd.get_povray()[0]) pov.write("#include \"povray.inc\"") pov.close() open("povray.inc","w").write("cm

[PyMOL] POVRAY Usage

Hi All, While ray tracing a scene with 10 x-large proteins in grid mode at 3600, 3600 (width, height) I ran out of RAM (2 GB). I tried it again by writing everything into a script and using pymol -qc which still ran out of memory. I read somewhere that POVRAY is less of a memory hog so I ins

[PyMOL] povray image mapping and default pigments

This is for the povray gurus out there... Occasionally I muck around with the time-consuming practice of trying to map pictures onto molecular surfaces with povray. I had this working to some extent, but something has changed (I think with the povray file format produced by pymol & make_pov where

[PyMOL] Povray macro (with attachment)

Okay, smart.., forgot the attachment and took a while to realize it :) On Thu, 17 Feb 2005 11:21:53 +0100 "T.A.Wassenaar" wrote: Hi Guys, For those interested, I've made a macro for Povray which allows to transform the Pymol povray output back to model space, or to t

[PyMOL] Povray macro

Hi Guys, For those interested, I've made a macro for Povray which allows to transform the Pymol povray output back to model space, or to transform povray models to Pymols camera space. After #including "pymolmacro.inc" call PYMOL_VIEW() with the eighteen floats from cmd.ge

Re: [PyMOL] Povray

* Tsjerk Wassenaar [2004-02-19 04:30] wrote: > > Hi Guys, > > I seem to have some trouble rendering with povray. The render starts and > finishes fine, and the image is created, but Pymol crashes with a > segmentation fault as soon as the rendering is done. The image is not > loaded to the vi

[PyMOL] Povray

Hi Guys, I seem to have some trouble rendering with povray. The render starts and finishes fine, and the image is created, but Pymol crashes with a segmentation fault as soon as the rendering is done. The image is not loaded to the viewer. I'm using povray 3.5 with Pymol 0.93 on a laptop (Int

Re: [PyMOL] POVRay output

* Armand Tepper [2003-04-15 04:09] wrote: > Dear all, > > 1) In a future version of Pymol, would it be possible > to parametrize the POVray output such that all > textures, finishes etc. are declared once as variables > (e.g. something like #declare carbon_texture = > texture) ? Now the textu

[PyMOL] POVRay output

Dear all, I am a new user of both pymol and this email list so I apologize when the items below already have been discussed earlier. I like the graphic output of the program very much! I am mainly interested in generating POV output files from Pymol instead of using the built-in renderer. Regardin

Re: [PyMOL] PovRay file export

Hi, On 2003-02-26 14:54 Andreas wrote: > > how to write the PovRay file out? (I do not want to embed PoyRay as the > renderer.) I also don't use povray directly as I like to edit the povray input file. I use the following script: # make_pov.py

[PyMOL] PovRay file export

Hi, how to write the PovRay file out? (I do not want to embed PoyRay as the renderer.) Bye andreas -- +++ GMX - Mail, Messaging & more http://www.gmx.net +++ Bitte lächeln! Fotogalerie online mit GMX ohne eigene Homepage!

RE: [PyMOL] POVRAY and Smooth Triangles ?

t: Saturday, February 08, 2003 9:15 PM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] POVRAY and Smooth Triangles ? > > > I recall reading something about a patch that is necessary > when running > povray from pymol in order to implement the smooth_color_triangl

[PyMOL] POVRAY and Smooth Triangles ?

I recall reading something about a patch that is necessary when running povray from pymol in order to implement the smooth_color_triangle setting. Could someone point me to this description? Thanks, Mark _ Mark A. Saper, Ph.D. Associate Professor of Biological

[PyMOL] povray rendering in windows

Hi all, Has anyone sucessfully set up pymol so it can ray trace images using povray?