On Mon, Jul 25, 2011 at 1:27 AM, Thomas Holder
wrote:
> Hi lina,
>
> lina wrote, On 07/22/11 12:55:
>>
>> Thanks very much for your advice, but I don't know which part is wrong,
>> the new saved one is not the ideal one I wanted, which was supposed to
>> be the one I saw from screen.
>>
>> do I ne
Hi lina,
lina wrote, On 07/22/11 12:55:
> Thanks very much for your advice, but I don't know which part is wrong,
> the new saved one is not the ideal one I wanted, which was supposed to
> be the one I saw from screen.
>
> do I need to modify the transfrom_by_camera_rotation scrips a bit.
> actua
On Thu, Jul 21, 2011 at 1:21 AM, Thomas Holder
wrote:
> Hi Lina,
>
>>> transform_by_camera_rotation
>>
>> PyMOL>transform_by_camera_rotation
>> Traceback (most recent call last):
>> File "/usr/local/lib/python2.6/dist-packages/pymol/parser.py", line
>> 464, in parse
>> exec(layer.com2+"\n",sel
Hi Lina,
>> transform_by_camera_rotation
>
> PyMOL>transform_by_camera_rotation
> Traceback (most recent call last):
> File "/usr/local/lib/python2.6/dist-packages/pymol/parser.py", line
> 464, in parse
> exec(layer.com2+"\n",self.pymol_names,self.pymol_names)
> File "", line 1, in
> Nam
On Wed, Jul 20, 2011 at 5:21 PM, Thomas Holder
wrote:
>> Thanks, but I still failed to get this new pdb.
>>
>> File -- Save molecular -->
>>
>> I wish the present coordinate will be saved as a new pdb after rotation.
>
> I guess with present coordinate you mean what you see on screen. To get this
> Thanks, but I still failed to get this new pdb.
>
> File -- Save molecular -->
>
> I wish the present coordinate will be saved as a new pdb after rotation.
I guess with present coordinate you mean what you see on screen. To get
this you need to transform the atom coordinates by current camera
Hi Lina,
Use the command line:
save newPDB.pdb, rotatedObject
Cheers,
-- Jason
On Tue, Jul 19, 2011 at 11:13 AM, lina wrote:
> On Tue, Jul 19, 2011 at 10:29 PM, Jason Vertrees
> wrote:
>> Hi Lina,
>>
>>> I don't know how to save a NEW.pdb which based on the old one but with
>>> different coo
On Tue, Jul 19, 2011 at 10:29 PM, Jason Vertrees
wrote:
> Hi Lina,
>
>> I don't know how to save a NEW.pdb which based on the old one but with
>> different coordinate,
>> do I need reset the axis?
>
> Just go into Editing Mode with the mouse by clicking Mouse > 3 Button
> Editing. Then, while hol
Hi Lina,
> I don't know how to save a NEW.pdb which based on the old one but with
> different coordinate,
> do I need reset the axis?
Just go into Editing Mode with the mouse by clicking Mouse > 3 Button
Editing. Then, while holding down the SHIFT key, position the
molecule as you want it (SHIFT
