[PyMOL] default view on load (2.0)?

Forgive me if this is answered somewhere else. I couldn't find the answer. How does one change the default view on startup/load (now cartoon in 2.0) to lines or sticks? Thanks, --paul -- Check out the vibrant tech

Re: [PyMOL] valence_size?

Clarification: valence_size for sticks does not work. It does work for lines. On 10/03/2017 04:32 PM, Paul Paukstelis wrote: I cannot seem to get the "valence_size" setting to do anything. Regardless of the setting, double bonds are drawn the same distance apart. Bug or am

[PyMOL] valence_size?

I cannot seem to get the "valence_size" setting to do anything. Regardless of the setting, double bonds are drawn the same distance apart. Bug or am I missing something? (Pymol. 2.0 incentive). -- Check out the

Re: [PyMOL] change in VRML format output

the next PyMOL release. > > Cheers, >Thomas > > On 24 Feb 2017, at 12:02, Paul Paukstelis <shocksofmig...@gmail.com> wrote: > >> There seem to have been some changes in how the VRML2 output is done >> between 1.7.X and 1.8.X, though I can't find it documented

Re: [PyMOL] 3D printing

Bob, I've just started 3D printing myself. I've been focusing on complex ball-and-stick models (I posted some questions about WRL output not too long ago), as there seems to be very few people doing these type of models. By most accounts, doing surfaces or cartoons is more straightforward,

Re: [PyMOL] VRML export

aul - > > The relevant function used for VRML export is RayRenderVRML2() in > layer1/Ray.cpp. > > Cheers, > > Jared > >> On Sep 22, 2016, at 11:43 AM, Paul Paukstelis <shocksofmig...@gmail.com> >> wrote: >> >> Greetings, >> >> I've star

[PyMOL] VRML export

Greetings, I've started playing with 3D printing some ball-and-stick models (primarily nucleic acids). I've worked up some Blender scripts to enable automatic pinning (e.g. add a small pin to cylinder of the O3'-P bond and a correspond hole in the phosphate sphere), however, I'm trying to

Re: [PyMOL] Session scene compatibility with MacPymol?

re up-to-date PyMOL version, but as an added bonus, a little exposure to a Unix command line environment. Hope that helps. Cheers, Jared On Sep 2, 2016, at 4:24 PM, Paul Paukstelis <shocksofmig...@gmail.com <mailto:shocksofmig...@gmail.com>> wrote: Are there known session issues wi

[PyMOL] Session scene compatibility with MacPymol?

Are there known session issues with MacPymol? I've saved a session for my students to look at using my linux incentive linux build and tried various session compatibility settings (1.6, 1.74, 1.76) but in all cases the preset scenes I've saved in the session are not loaded when the session is

Re: [PyMOL] measuring wizard

I've run into this before as well. I think the simplest work around is just to alter the chain of the symmetry mate. --paul On 10/02/2015 02:58 PM, Oganesyan, Vaheh wrote: > Hi PyMOL users, > > In measuring wizard I'm consistently facing an annoying property that allows > me to measure only

[PyMOL] AxPymol with wine?

Has anyone successfully installed AxPymol under wine? I thought I would give this a try as a way to avoid having to fire up a VM on older hardware. --paul -- Dive into the World of Parallel Programming The Go Parallel

[PyMOL] Pymol OpenGL ES?

Just out of curiosity, are there any plans to port pymol over to use OpenGL ES to bring it to more mobile devices? -- Paul Paukstelis, Ph.D Assistant Professor University of Maryland Chemistry Biochemistry Dept. Center for Biomolecular Structure Organization pauks...@umd.edu 301-405-9933

Re: [PyMOL] Pymol OpenGL ES?

), pymol would really make it a complete mobile device. --p On 07/17/2013 12:02 PM, Jason Vertrees wrote: Hi Paul, It's been done already. See, PyMOL on the iPad (http://pymol.org/mobile). Cheers, -- Jason On Wed, Jul 17, 2013 at 10:55 AM, Paul Paukstelis pauks...@umd.edu wrote: Just out

[PyMOL] Control and shift keys not functioning (Fedora 18)

specific as coot and other programs work fine. Has anyone seen this before? Thanks, --paul -- Paul Paukstelis, Ph.D Assistant Professor University of Maryland Chemistry Biochemistry Dept. Center for Biomolecular Structure Organization pauks...@umd.edu 301-405-9933

[PyMOL] educational build?

I would be interested in using pymol in my class. Is there an educational build that students can download? All the links I found are dead. Thanks. --paul -- Sell apps to millions through the Intel(R) Atom(Tm)