Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 10

2010-02-24 Thread Kin Sing Stephen Lee
Hello, I have gone through the tutorial and follow every single step. The plugin said it successfully generate the receptor pdbqt file. However, when I get to the docking, it still cannot detect the receptor so I cannot run any autogrid or autodock. Is there any reason for that? Thank

Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 10

2010-02-19 Thread Kin Sing Stephen Lee
Dear all, Sorry I fixed the prepare_ligand4.py problem. However, when I try to do the autodock in the plugin, the plugin cannot recognize the receptor so there is no choice available in the receptor in the docking page. If I click autogrid or autodock, the program shows no response. Is

Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 10

2010-02-19 Thread Daniel Seeliger
Sing, if there is no receptor listed you probably didn't generate one. You can do that on the Generate Receptor page. -Daniel On Friday 19 February 2010 07:13:58 pm Kin Sing Stephen Lee wrote: Dear all, Sorry I fixed the prepare_ligand4.py problem. However, when I try to do the

Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 10

2010-02-19 Thread Shiven Shandilya
Hello Sing, Perhaps going over the basic tutorial will help make things clear: http://wwwuser.gwdg.de/~dseelig/plugin_tutorial.html Best, Shiven On Fri, Feb 19, 2010 at 1:13 PM, Kin Sing Stephen Lee s...@chemistry.msu.edu wrote: Dear all, Sorry I fixed the prepare_ligand4.py problem.