Re: [Rd] How to assign NULL value to pairlist element while keeping it a pairlist?

Michael, thanks for this info. I've stumbled upon this in a case where I walk an R expression (the AST) and (optionally) modifies it (part of the globals package). In R expressions, a function definition uses a pairlist to represent the arguments. For example, > expr <- quote(function(x = 1)

[Rd] integerOneIndex/get1index/... in vector access error messages

Hi! We noticed that these error messages were changed to include the name of the function that causes them: > { x<-c(1,2); x[[c("a", "b")]] } old: “Error in x[[c("a", "b")]] : attempt to select more than one element” new: “Error in x[[c("a", "b")]] : attempt to select more than one element in

[Rd] How to assign NULL value to pairlist element while keeping it a pairlist?

Hi, I seem to not be able to assign NULL to an element of a pairlist without causing it to be coerced to a plain list. For example: > x <- pairlist(1, 2) > class(x) [1] "pairlist" > x[1] <- list(NULL) > class(x) [1] "list" This actually true for all [()<- assignments regardless of list value,

Re: [Rd] How to assign NULL value to pairlist element while keeping it a pairlist?

Thanks, this was what I expected. There is a desire to eliminate the usage of pairlist from user code, which suggests the alternative of allowing for function arguments to be stored in lists. That's a much deeper change though. On Wed, Oct 12, 2016 at 12:31 PM, Henrik Bengtsson

Re: [Rd] How to assign NULL value to pairlist element while keeping it a pairlist?

Hi Henrik, It would help to understand your use case for pairlists. Thanks, Michael On Wed, Oct 12, 2016 at 9:40 AM, Michael Lawrence wrote: > The coercion is probably the most viable workaround for now, as it's > consistent with what happens internally for calls. All

Re: [Rd] How to assign NULL value to pairlist element while keeping it a pairlist?

The coercion is probably the most viable workaround for now, as it's consistent with what happens internally for calls. All pairlists/calls are converted to list for subassignment, but only calls are converted back. My guess is that the intent was for users to move from using a pairlist to the

[R-pkg-devel] fastICA on win-builder.r-project.org not installed?

Dear R package devels, I am trying to check a package which depends on fastICA on win-builder.r-project.org, the checks fail complaining that fastICA is not installed. Cheers, Guido PS: the log can be found here: https://win-builder.r-project.org/265alZrIl0s6/00check.log -- Guido Kraemer

Re: [R-pkg-devel] fastICA on win-builder.r-project.org not installed?

> Guido Kraemer > on Wed, 12 Oct 2016 12:26:14 +0200 writes: > Dear R package devels, I am trying to check a package > which depends on fastICA on win-builder.r-project.org, the > checks fail complaining that fastICA is not installed. Well, you

Re: [Bioc-devel] Release branch commits disabled today

The 3.3 branch is now frozen. Commits to the devel branch are still possible. Martin On 10/12/2016 06:48 AM, Martin Morgan wrote: As part of the release schedule http://bioconductor.org/developers/release-schedule/ the ability to commit to the Bioconductor 3.3 branch will end today at

[Bioc-devel] NEWS files

Package authors -- please update your NEWS files so that your changes during this release cycle can be included in the release notes. The deadline for updates is this Friday, October 14. A well-formatted NEWS (or NEWS.Rd) file can be parsed by the 'news()' function. An example NEWS file is

[Bioc-devel] Release branch commits disabled today

As part of the release schedule http://bioconductor.org/developers/release-schedule/ the ability to commit to the Bioconductor 3.3 branch will end today at approximately 3pm. The final 3.3 build will be run this evening. The ability to commit to the devel branch (in preparation for the 3.4

Re: [Bioc-devel] philr recent build fail

This is a problem with ggtree not with your package. You should be okay. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel

[Bioc-devel] philr recent build fail

Hi All, I just checked on the status of philr build/check report. It had been clear as of 2 weeks ago but when I just checked it appears to be failing to build on all platforms. (included built report from malbec1 below). I tried R CMD check and BiocCheck on my local machine without

[Bioc-devel] RMassBank (almost) builds ...

Hi all, Thanks to Laurent and Jo for updating MSnbase and thanks to the BioC team for getting the email updates working again! The good news is that RMassBank now builds on most platforms... but ... 1) we have a build error due to a Java version issue with rcdk, this has been a problem on

Re: [Bioc-devel] NEWS files

On 10/12/2016 05:00 PM, Dario Strbenac wrote: Good day, ClassifyR has a NEWS file, but I don't see any link to it on ClassifyR's webpage. I see it: https://bioconductor.org/packages/devel/bioc/html/ClassifyR.html Where are you looking? H. There are no warning or errors during the

Re: [Bioc-devel] NEWS files

Good day, ClassifyR has a NEWS file, but I don't see any link to it on ClassifyR's webpage. There are no warning or errors during the checking process. What is causing it to be missed ? I also tried news(package = "ClassifyR") and it renders well, although the R logo is gigantic.

Re: [Bioc-devel] NEWS files

Good day, I see it, too. There's no problem. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel