On Sat, May 24, 2014 at 4:11 PM, Juan Ulises Bohorquez Carvajal
juan.bohorq...@ecopetrol.com.co wrote:
Thanks, could you send to me an official certificate in pdf with this
information? Or a certified email to support the information license?
And what would be the authority that supplies such
Hey guys,
I have tested the metafor trim and fill function (y:SD, x:SMD)on my data
set and yielded the following result:
1. missing studies on the right: 34
2. open circles on the rights side appear to be the number of additional
effects
3. adjusted d would be higher than observed d.
Since
At 13:10 22/05/2014, Verena Weinbir wrote:
Hello,
thank you very much for your replies. I am
almost done :-) but theres one study left, where
I only have sample size (not group size), mean
values and standarddeviations. Is there a way to
compute cohens d from this data?
You could assume
At 09:34 26/05/2014, Verena Weinbir wrote:
Hey guys,
I have tested the metafor trim and fill function (y:SD, x:SMD)on my data
set and yielded the following result:
1. missing studies on the right: 34
That seems a lot of missing studies unless you have a very large set
of primary studies.
thanks for your reply, Michael!
ad primary studies:
yup, I have a large set of studies: At the moment I consider 126 data sets
in my analysis.
ad interpretation:
thats an interesting information. But usually there should be found an
effect.
ad bit :-):
I am irritiated, because in the plots I
From help(forest.rma):
pch -- plotting symbol to use for the observed effect sizes or outcomes. By
default, a solid circle is used. Can also be a vector of values. See points for
other options.
pch.fill -- plotting symbol to use for the effect sizes or outcomes filled in
by the trim and fill
On Sun, May 25, 2014 at 7:18 PM, Jack Pincus jack.pin...@sbcglobal.net wrote:
I've been using R for about 9 months and just installed R 3.1.0 on a new
computer running Windows 8.1. IE is the default browser. When I type
help(round) or ?round the address:
thanks for your reply, Wolfgang!
Regarding the dots/circle -problem I am relieved now :-)
Regarding the Trim and Fill outcome I don't really think that it's the
wrong side, I just dont know how to interpret the result.
regtest () reveals a negative z, which is not significant.
ranktest ()
I do want to run a R script (runrox.sh) containing two commands:
library(roxygen2)
roxygenize(imsbInfer)
When pasting these 2 lines into R they run with no error.
But when calling:
Rscript runrox.sh
the script produces this error:
roxygen fails with
Error: Failure in roxygen block beginning
Hi,
As I could not find any way to install pdflatex (it didn't appear on a yum
search), I tried a method that claimed to install pdflatex via a package
Trying
yum provides */pdflatex
will yield the package name:
texlive-latex-bin-bin.
Though, I have to say I don't quite see how you
the same script which is not working with Rscript does work with R CMD BATCH.
I thought the main difference between Rscript and R CMD BATCH is where
the ouptut gets redirected and that Rscript should preferred over the
old R CMD BATCH.
On 26 May 2014 15:12, Witold E Wolski
This is what I tried:
R CMD check $(PKGNAME)_$(PKGVERS).tar.gz --no-manual --no-rebuild-vignettes
R CMD build --no-manual --no-rebuild-vignettes $(PKGSRC)
But still somehow the R CMD build attempts to build the vignettes (OK
with me), but also run
texi2dvi on them producing the error message
Dear R package developers and users,
I am pleased to announce the official release of our newly developed
package 'dnet', which intends to analyse omics data in terms of network,
evolution and ontology.
It has features:
1. Identification of gene-active networks from high-throughput omics data;
Dear R helpers,
today I found something interesting in R. 0^0 gives value 1 in R. But it
is undefined in mathematics. During debugging a R code, I found it and it
effects my program severely. So my question is why it is defined 1 in R?
Is there any particular reason or its a bug in the R
It's not a TeX issue veven, it's a Fedore issue :-)-O
pdflatex is standard in all (most) TeX distributions.
TeXLive is probably the standard TeX distribution for Linux, it has
a Windoze version and a MacTeX version (or rather two, a complete
and a basic). I have used both on Linux and the Mac
Thank you Ray and Jim.
It works with file.choose().
I post following the output.
Antonio Carazo
Regional Sales Manager FOSS IBERIA.
Ph. D. student in Social Sciences.
list.files()
[1] DATOS1.txt open.exe R.dll
R.exe Rblas.dll
But then how do you know which allele is the reference and which the risk
allele (between A/T/C/G)?
2014-05-26 1:41 GMT+01:00 David Duffy david.du...@qimr.edu.au:
francesca casalino francy.casal...@gmail.com asked:
Does anyone know how to find the reference allele used for genetic
Thanks
Mensaje original
De: Barry Rowlingson
Fecha:26/05/2014 03:11 AM (GMT-05:00)
A: Juan Ulises Bohorquez Carvajal
CC: John Kane ,r-help@R-project.org
Asunto: Re: [R] R License
On Sat, May 24, 2014 at 4:11 PM, Juan Ulises Bohorquez Carvajal
juan.bohorq...@ecopetrol.com.co
Hi
I posted a question to this list, and received an email indicating that it is
awaiting moderation. However I have not received any feedback yet. If the
question is not appropriate, I’d like to know where or how I should post
differently, if possible.
Thanks and Regards
Justin Michell
Thanks for your suggestions. I did some further digging and found the problem
was more subtle. I use Dashlane, a password management program, which requires
IE to run in protected mode under Win 8. Disabling protected mode solved the
problem with R help.
Jack
On May 26, 2014, at 12:02 AM,
I am having this problem because I need to run a meta-analysis and to align
all the variants between the different studies included in the
meta-analysis I need to know the effect allele used to get the beta (so
that I can flip the beta if the effect allele is flipped compared to all
other
On 26/05/2014 13:16, ritwi...@isical.ac.in wrote:
Dear R helpers,
today I found something interesting in R. 0^0 gives value 1 in R. But it
is undefined in mathematics. During debugging a R code, I found it and it
effects my program severely. So my question is why it is defined 1 in R?
Is there
I have divided my data into a training set and a test set.
I have then applied a logistic transformation to the variables
in the training set and have used pam to assign the observations
to one of four clusters.
My question is How do I score the test observations now that I have the
training set
Wrong forum. Please contact Statconn for support.
---
Jeff NewmillerThe . . Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go...
Hey,
I want to build a forest plot which states author and year for a subset of
studies.
But if I use this argument:
resultREML - rma(yi=yi, vi=vi, method = REML,
data = subset(empa, task==x))
resultREML
forest(resultREML, , slab=paste(empa$author, empa$year,sep = ,))
I
Hi,
May be you can try ?cut
dat - read.table(text=INCOME
20100
26800
55050
82000,sep=,header=TRUE)
dat - transform(dat, INCOME_RANGE=as.character(cut(INCOME,breaks=seq(0,1e5,
by=25e3),labels=c(below 25000, 25000-4, 5-74999,75000-9
dat
# INCOME INCOME_RANGE
#1 20100
You might find searching the web on this topic educational. Consider [1] and
[2], for example.
I doubt this will be changing, so you should do your exponentiation in a
function that handles your special case.
By the way, as nice as RStudio might be, it is not R... it USES R. Examples
like
Hi,
I couldn't reproduce the error.
str(wt.aligned)
Formal class 'dwt' [package wavelets] with 11 slots
..@ W :List of 3
.. ..$ : num [1:32, 1] -0.252 0.19 0.315 0.451 0.169 ...
.. ..$ : num [1:16, 1] 0.5324 -0.0644 0.2494 0.6509 0.1955 ...
.. ..$ : num [1:8, 1] -0.558 0.734 -0.122
It was passed through (see the archive). I suspect the problem is that your
question seems to be about statistics rather than about R. For future
reference, I also note that it was posted in HTML format rather than plain
text, and small, reproducible examples are always expected because it is
Pass 'slab' to the rma() function instead of the forest() function. Also,
'slab' is evaluated in the data frame passed via the 'data' argument, so no
need to use empa$... And there is a 'subset' argument for rma(). Might as well
use it. This should do it:
resultREML - rma(yi=yi, vi=vi,
On Mon, May 26, 2014 at 8:53 AM, Jack H. Pincus
jack.pin...@sbcglobal.net wrote:
Thanks for your suggestions. I did some further digging and found the
problem was more subtle. I use Dashlane, a password management program, which
requires IE to run in protected mode under Win 8. Disabling
Hi there,
I hope to use the emf plot produced by R in Word. However, I have
problems with setting the plot size. Here is a mini-example code:
win.metafile(abcd.emf, height =4, width=4)
plot(1:10)
dev.off()
I hope to get a emf plot with size 4x4in and pointsize 12pt. However, I
got a plot
Thank you
I spend more time looking into it since I placed the question and it seems
that there is a conflict between two or more packages when open jointly with
the wavelet package for this specific example. I am trying to identify the
packages.
Many thanks againÂ
BarnabyÂ
library(methods)
Regards,
Yihui
--
Yihui Xie xieyi...@gmail.com
Web: http://yihui.name
On Mon, May 26, 2014 at 9:48 AM, Witold E Wolski wewol...@gmail.com wrote:
the same script which is not working with Rscript does work with R CMD BATCH.
I thought the main difference between Rscript and R
We would like to announce the following statistics course:
Topic: Introduction to MCMC, Linear mixed effects models and GLMM
with R
Where:Parks Canada, Banff, Canada
When: 22-26 September, 2014
Flyer: http://www.highstat.com/Courses/Flyer2014_09Banff.pdf
Website:
Thanks Gabor. I'll try that.
Jack
Sent from my iPad
On May 26, 2014, at 2:40 PM, Gabor Grothendieck ggrothendi...@gmail.com
wrote:
On Mon, May 26, 2014 at 8:53 AM, Jack H. Pincus
jack.pin...@sbcglobal.net wrote:
Thanks for your suggestions. I did some further digging and found the
For numeric/continuous/normal values you can use the mvrnorm function
in the MASS package (set the empirical argument to TRUE to force the
exact correlation). Some would argue that you should not compute
correlations with binary variables, but you could generate 4 normals,
then take the last 2
On May 24, 2014, at 7:47 PM, Hurr wrote:
Thanks again Jim.
I stuck xaxs=i in the existing par() command and it worked as I wanted it.
I haven't looked at the documentation yet, but that's next.
Generally a better approach would be to study the documentation first.
Hurr
View
On May 26, 2014, at 9:42 AM, Prof Brian Ripley wrote:
On 26/05/2014 13:16, ritwi...@isical.ac.in wrote:
Dear R helpers,
today I found something interesting in R. 0^0 gives value 1 in R. But it
is undefined in mathematics. During debugging a R code, I found it and it
effects my program
Which version of R is used for quartz function please?
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
I am trying to use the plotmo package to generate a partial dependence plot
for a CART model created with rpart. When running plotmo, I get Error:
get.plotmo.y returned the wrong length (got 204938 expected 205000). The
rpart predict function does indeed return 204938 results, but plotmo is
Nothing to do with R versions. 'quartz()' is a Mac plotting device.
?Devices
--
David
Sent from my iPhone
On May 26, 2014, at 2:58 PM, Megersa magetade2...@gmail.com wrote:
Which version of R is used for quartz function please?
[[alternative HTML version deleted]]
On Mon, 26 May 2014 09:43:45 AM Ranjan Maitra wrote:
...
Though, I have to say I don't quite see how you managed to install R
without the above package (it is a required dependency on Fedora).
...
Hope the above helps!
Best wishes,
Ranjan
Hi Ranjan,
As I always install R from source, I
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