[R] error message!

2007-08-26 Thread Usman Shehu
Dear R-users, Can some one help me out. I tried installing some packages in R_2.5.1 but I get an error message as shown below. This is unusual since I have been installing and updatings packages in the same version of R. chooseCRANmirror() update.packages(ask='graphics') Error in

Re: [R] error message!

2007-08-26 Thread Duncan Murdoch
On 26/08/2007 6:13 AM, Usman Shehu wrote: Dear R-users, Can some one help me out. I tried installing some packages in R_2.5.1 but I get an error message as shown below. This is unusual since I have been installing and updatings packages in the same version of R. chooseCRANmirror()

Re: [R] error message!

2007-08-26 Thread Duncan Murdoch
Message From: Duncan Murdoch [EMAIL PROTECTED] To: Usman Shehu [EMAIL PROTECTED] Cc: r-help@stat.math.ethz.ch Sent: Sunday, 26 August, 2007 12:02:13 PM Subject: Re: [R] error message! On 26/08/2007 6:13 AM, Usman Shehu wrote: Dear R-users, Can some one help me out. I tried installing

Re: [R] Error message when using zero-inflated count regression model in package zicounts

2007-08-16 Thread James R. Milks
Dr. Stevens, I've double-checked my variable lengths. All of my variables (Total.vines, Site, Species, and DBH) came in at 549. I did correct one problem in the data entry that had escaped my previous notice: somehow the undergrad who entered all the data managed to make the Acer

Re: [R] Error message when using zero-inflated count regression model in package zicounts

2007-08-16 Thread Achim Zeileis
On Thu, 16 Aug 2007, James R. Milks wrote: Dr. Stevens, I've double-checked my variable lengths. All of my variables (Total.vines, Site, Species, and DBH) came in at 549. I did correct one problem in the data entry that had escaped my previous notice: somehow the undergrad who entered all

Re: [R] Error message when using zero-inflated count regression model in package zicounts

2007-08-16 Thread James Milks
No, zeroinfl() in pscl did not give me any errors when I ran the model. So there may be a bug in zicounts. Only problem now is how to interpret the zeroinfl model. Am I correct in my understanding that zeroinfl runs both the poisson and binomial models without interactions? I'm

Re: [R] Error message when using zero-inflated count regression model in package zicounts

2007-08-14 Thread Hank Stevens
Hi Jim, Two thoughts come to me, unencumbered by the thought process or knowledge of zicounts: 1. Is Poisson really NOT appropriate? (do you have to use zicounts?) 2. Are you 110% certain that all variables are the same length? Would NA's interfere? Cheers, Hank On Aug 13, 2007, at 5:10 PM,

[R] Error message when using zero-inflated count regression model in package zicounts

2007-08-13 Thread James Milks
I have data on number of vines per tree for ~550 trees. Over half of the trees did not have any vines and the data is fairly skewed (median = 0, mean = 1.158, 3rd qu. = 1.000). I am attempting to investigate whether plot location (four sites), species (I'm using only the four most common

[R] error message: image not found

2007-08-09 Thread Jungeun Song
I have a R version 2.4 and I installed R version 2.5(current version) on Mac OS X 10.4.10. I tried dyn.load to load a object code compiled from C source. I got the following error message: Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library

Re: [R] Error message in lmer

2007-08-02 Thread lorenz.gygax
I do not think anyone has answered this. I'm trying to run a simple one-way ANCOVA with the lmer function in R package lme4, but have encountered some conceptual problem. The data file MyData.txt is like this: Group Subj Cov Resp A1 3.90 4.05 A 2 4.05 4.25 A 3

Re: [R] Error message in lmer

2007-08-02 Thread Gang Chen
Thanks a lot for the response and explanation, Lorenz! It seems that I can run the analysis with 'lm' without treating subject as a random factor lm(Resp ~ Group*Cov, TestData) Thanks, Gang On Aug 2, 2007, at 5:09 AM, [EMAIL PROTECTED] [EMAIL PROTECTED] wrote: I do not think anyone has

[R] Error message when running lm() with na.action=NULL

2007-07-31 Thread Garavito,Fabian
Hi there, I am trying to run a liner regression using lm with na.action = NULL, but I am getting an error message. Any ideas as to why this may be happening? Please see code and error message below: reg_test-lm(yy~.,data=test,na.action=NULL) Error in lm.fit(x, y, offset = offset, singular.ok =

Re: [R] Error message when running lm() with na.action=NULL

2007-07-31 Thread Garavito,Fabian
- From: Patrick Burns [mailto:[EMAIL PROTECTED] Sent: Tuesday, July 31, 2007 12:55 PM To: Garavito,Fabian Subject: Re: [R] Error message when running lm() with na.action=NULL Garavito,Fabian wrote: I was trying to get a vector of residuals where NA would be assigned to the lm residual vector

[R] Error message in lmer

2007-07-30 Thread Gang Chen
I'm trying to run a simple one-way ANCOVA with the lmer function in R package lme4, but have encountered some conceptual problem. The data file MyData.txt is like this: Group Subj Cov Resp A 1 3.90 4.05 A2 4.05 4.25 A3 4.25 3.60 A4 3.60

[R] error message survreg.fit

2007-06-27 Thread Drescher, Michael (MNR)
Dear All, I am doing a parametric survival analysis with: fit - survreg(Surv(xyz$start, xyz$stop, xyz$event, type=interval) ~ 1, dist='loglogistic') At this point I do not want to look into covariates, hence the '~1' as model formulation. As event types I have exact, interval, and right

[R] error message: only first element in each line of matrix used

2007-06-06 Thread Melanie Ann Harsch
I have a matrix and am trying to write a code to 1. identify all neg values along each line 2. for each neg value I need to identify min(j+3) 3. end with this code: eq[i,j]- ifelse(mat.r[i,j] (0.5*mat.s[i,j]), mat.all[i,j], 0) This is the code I have so far. I have tried several different

Re: [R] error message: only first element in each line of matrix used

2007-06-06 Thread jim holtman
your problem is in the statement: if(mat.all[i,(j-int):(j-1)]0){ you have multiple values in the comparison and the 'if' statement can only use a single value. Do you want the statement to read: if(all(mat.all[i,(j-int):(j-1)]0)){ which will test for 'all' the comparisons to be true? On

[R] error message

2007-05-22 Thread karen power
Hi, I am trying to install the package exonmap and RMySQL however I keep getting the following error: Error in library(pkg, character.only = TRUE) : 'RMySQL' is not a valid package -- installed 2.0.0? I have R version 2.4.1 so I know its not a version issue. I deleted and reinstalled

Re: [R] error message

2007-05-22 Thread Martin Morgan
Hi Karen -- This sounds like a Bioconductor question, and should be sent to the Bioconductor list. http://www.bioconductor.org/docs/mailList.html Likely the complaint is about RMySQL being too old, rather than R. The idea of 'reinstalling folders' doesn't sound like a good strategy for updating

Re: [R] error message

2007-05-22 Thread Benilton Carvalho
install.packages(RMySQL, dep=T) should fix it for you. b ps: The error says RMySQL is the problem... it is not complaining about R itself (although it would not be a bad idea, given that the latest R is v 2.5.0, so it would be a better idea to start by upgrading your R) On May 22, 2007,

[R] error message when using outer function

2007-03-05 Thread Reinman, Grant
Dear R-users, I have two sets of code that appear to me to be equivalent, shown below, and yet I get the error message Error in dim(robj) - c(dX, dY) : dim- : dims [product 4] do not match the length of object [1] after executing the assignment to logdens2. Both functions post.a1 and post.a2

Re: [R] error message when using outer function

2007-03-05 Thread Petr Klasterecky
Comments inside. Reinman, Grant napsal(a): Dear R-users, I have two sets of code that appear to me to be equivalent, shown below, and yet I get the error message Error in dim(robj) - c(dX, dY) : dim- : dims [product 4] do not match the length of object [1] after executing the

[R] Error message when building a package

2007-01-29 Thread C. Lillian Yau
I'm trying to build a package. The machine is PowerPC G4 with Mac OS 10.4.8, and I'm using R2.4.1. I get R CMD build roots working, and it created roots.tar.gz. But I get the following message when I run R CMD INSTALL -l ../myrlibrary roots.tar.gz

Re: [R] Error message when building a package

2007-01-29 Thread Prof Brian D Ripley
Please update your Xcode tools. According to http://cran.r-project.org/bin/macosx/RMacOSX-FAQ.html 2.2 or later is needed, and 2.4.1 is current. On Tue, 30 Jan 2007, C. Lillian Yau wrote: I'm trying to build a package. The machine is PowerPC G4 with Mac OS 10.4.8, and I'm using R2.4.1. I

Re: [R] Error message using normality test in vars

2006-12-29 Thread Pfaff, Bernhard Dr.
I'm running a vector-time series model with the vars package. When I test the univariate and multivariate normality of the residuals using normality(), I get the results, but also this warning Warning messages: 1: longer object length is not a multiple of shorter object length in: b2

[R] Error message using normality test in vars

2006-12-28 Thread David Kaplan
Hi all, I'm running a vector-time series model with the vars package. When I test the univariate and multivariate normality of the residuals using normality(), I get the results, but also this warning Warning messages: 1: longer object length is not a multiple of shorter object

[R] Error Message saying .Call(R_lazyLoadDBfetch, etc.

2006-11-24 Thread Jacques VESLOT
Hi, I got the following error message when running a function of mine doing intensive computations: Erreur dans .Call(R_lazyLoadDBfetch, key, file, compressed, hook, PACKAGE = base) : référence d'argument par défaut récursive I haven't found neither where the problem lies nor what

Re: [R] Error Message saying .Call(R_lazyLoadDBfetch, etc.

2006-11-24 Thread Peter Dalgaard
Jacques VESLOT [EMAIL PROTECTED] writes: Hi, I got the following error message when running a function of mine doing intensive computations: Erreur dans .Call(R_lazyLoadDBfetch, key, file, compressed, hook, PACKAGE = base) : référence d'argument par défaut récursive I

Re: [R] error message for row names

2006-11-08 Thread Prof Brian Ripley
On Wed, 8 Nov 2006, Taka Matzmoto wrote: Hi R users - I got an error message when reading in a saved file (a list structure) dget(REPLICATION001) Error in attributes(.Data) - c(attributes(.Data), attrib) : row names must be 'character' or 'integer', not 'double' I don't need row

Re: [R] Error Message Documentation

2006-09-17 Thread Uwe Ligges
cjkogan111 wrote: Hello, I am new to R, and trying to work with it. I have a couple of quick questions. First, I made a program and got the following error message. -- Error in if

[R] Error Message Documentation

2006-09-16 Thread cjkogan111
Hello, I am new to R, and trying to work with it. I have a couple of quick questions. First, I made a program and got the following error message. -- Error in if

Re: [R] error message from lm.ridge() in MASS ***package***

2006-08-24 Thread Martin Maechler
jz7 == jz7 [EMAIL PROTECTED] on Tue, 22 Aug 2006 17:10:42 -0400 (EDT) writes: jz7 Dear all, jz7 I got a wierd problem when using lm.ridge() in MASS library. there is MASS the book and MASS the package, and there is even a MASS library (namely the file MASS.so or MASS.dll

[R] error message from lm.ridge() in MASS library

2006-08-22 Thread jz7
Dear all, I got a wierd problem when using lm.ridge() in MASS library. When my X matrix has few columns, there is no problem. But when my X matrix gets larger (over 1000 columns), I got the following error: Error in Xs$v %*% a : non-conformable arguments In addition: Warning messages: 1: longer

Re: [R] Error message when using optim

2006-08-09 Thread Prof Brian Ripley
(Subject changed to something less perjorative. This is not `optim error'.) On Wed, 9 Aug 2006, Frank Black wrote: Dear all, There have been one or two questions posted to the list regarding the optim error non-finite finite-difference value [4]. The error apparently means that the

[R] error message

2006-05-23 Thread gabriela escati peñaloza
Hello, we work in nlme, with R version 2.2.1. We ran the follwing sentence, a growth function, formula(my data.gd) L.gd ~ Largo | ID Rich- function(Largo, Linf, K, t0, m) Linf *(1-exp(-K(edad-t0)))^(1/(1-m)) Rich.nlme - nlme(Largo ~ Rich(edad, Linf, K, t0, m), + data = L.gd, + fixed

Re: [R] Error message with nmds

2006-05-17 Thread Jari Oksanen
On Tue, 2006-05-16 at 13:25 -0700, Jonathan Hughes wrote: I am trying to apply nmds to a data matrix but I receive the following error message: Error in isoMDS(dis, y = y, k = k, maxit = maxit) : zero or negative distance between objects 5 and 7 The data are in a vegetation

[R] Error message with nmds

2006-05-16 Thread Jonathan Hughes
I am trying to apply nmds to a data matrix but I receive the following error message: Error in isoMDS(dis, y = y, k = k, maxit = maxit) : zero or negative distance between objects 5 and 7 The data are in a vegetation cover-class matrix (species in columns, plots in rows, classes 1-8

Re: [R] error message explanation for lmer

2006-04-13 Thread Spencer Graves
I don't know how to get that particular error message from lmer, but I can guess that it might occur when you are trying to estimate more parameters than the data will support. To overcome this, I would try the following: First, have you tried experimenting with

[R] error message explanation for lmer

2006-04-11 Thread Andreas Svensson
I got strange error messages when I had other packages opened the same time as lme4 (e.g. as nlme). Try to not have other libraries loaded. /A __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the

[R] error message explanation for lmer

2006-04-10 Thread Bill Shipley
I am getting the following error message using the lmer function for mixed models with method=Laplace: nlminb returned message false convergence (8) in: LMEopt(x=mer,value=cv) Could anyone explain what this means, and how I might overcome (or track down) the problem? Bill Shipley

Re: [R] error message

2006-03-28 Thread Prof Brian Ripley
Yes, the author of the message does :) Your fit is exactly collinear. From ?predict.lm If the fit is rank-deficient, some of the columns of the design matrix will have been dropped. Prediction from such a fit only makes sense if 'newdata' is contained in the same subspace as

[R] error message

2006-03-27 Thread stephenc
Hi Does anyone know what this means: glm.model = glm(formula = as.factor(nextDay) ~ ., family=binomial, data=spi[1:1000,]) pred - predict(glm.model, spi[1001:1250,-9], type=response) Warning message: prediction from a rank-deficient fit may be misleading in: predict.lm(object, newdata,

[R] error message with stats package fx cor R aqua v1.14

2006-03-21 Thread Betty Gilbert
Hello, Sorry if this is somewhere in the archives but i couldn't find it. I am using the funtion cor() and inputting a large matrix with a column of 0, for which i get NA's for. I'm looking for a way to overcome that divide by 0 error btw but my real issue is this: I specify the method as

Re: [R] Error Message from Variogram.lme Example

2006-03-14 Thread Prof Brian Ripley
On Tue, 14 Mar 2006, Prof Brian Ripley wrote: So this is most likely a bug in package nlme. However, we need a reproducible example to be able to do anything about it, and without even the traceback() we cannot be sure that it is in nlme. Please follow the bug-reporting procedure. It does

[R] Error Message from Variogram.lme Example

2006-03-13 Thread Rick Bilonick
When I try to run the example from Variogram with an lme object, I get an error (although summary works): R : Copyright 2005, The R Foundation for Statistical Computing Version 2.2.1 (2005-12-20 r36812) ISBN 3-900051-07-0 ... fm1 - lme(weight ~ Time * Diet, BodyWeight, ~ Time | Rat) Error:

Re: [R] Error Message from Variogram.lme Example

2006-03-13 Thread Prof Brian Ripley
So this is most likely a bug in package nlme. However, we need a reproducible example to be able to do anything about it, and without even the traceback() we cannot be sure that it is in nlme. Please follow the bug-reporting procedure. On Mon, 13 Mar 2006, Rick Bilonick wrote: When I try

Re: [R] Error Message from Variogram.lme Example

2006-03-13 Thread Dieter Menne
Rick Bilonick rab45+ at pitt.edu writes: When I try to run the example from Variogram with an lme object, I get an error (although summary works): library(nlme) fm1 - lme(weight ~ Time * Diet, BodyWeight, ~ Time | Rat) Variogram(fm1, form = ~ Time | Rat, nint = 10, robust =

Re: [R] error message in cph

2006-03-11 Thread Uwe Ligges
[EMAIL PROTECTED] wrote: Hi, List, I am using function 'cph' in package 'Design'. I have run into this error message but could not find documentation after looking for a long time. Could someone help me out? What kind of problem it is in my data set and how to fix it? Thanks a lot!

[R] error message in cph

2006-03-10 Thread WWei
Hi, List, I am using function 'cph' in package 'Design'. I have run into this error message but could not find documentation after looking for a long time. Could someone help me out? What kind of problem it is in my data set and how to fix it? Thanks a lot! Auston Error in fitter(X, Y,

[R] error message in cox regression cph()

2006-02-02 Thread May, Roel
Hi, I have been trying to get the cph() function of the Design package to work but get an error message I don't understand: Error in if (!length(fname) || !any(fname == zname)) { : missing value where TRUE/FALSE needed I have tried the same for a dummy dataset I made, and than it

Re: [R] error message in cox regression cph()

2006-02-02 Thread Frank E Harrell Jr
May, Roel wrote: Hi, I have been trying to get the cph() function of the Design package to work but get an error message I don't understand: Error in if (!length(fname) || !any(fname == zname)) { : missing value where TRUE/FALSE needed I have tried the same for a dummy

[R] error message from building R in Mac

2005-12-07 Thread Fang-Yi Chiou
Following the instruction in R website and downloading gcc and g77, I am trying to configure and build R in my Mac laptop, but got some error message that I do not know how to resolve. Do any of you know how to solve this problem? After type ./configure, I got the following message. R is

[R] Error message in polr

2005-11-12 Thread german . lopez
Dear members of the list, I'm fitting ordinal regressions using polr, and in some models I get the error copied below. Dependent variable is an ordered factor of bird abundance categories, and predictors are continuous habitat variables. ro6 - polr(formula = abun ~ InOmbrot + Oliva.OC +

Re: [R] Error message: The following object(s) are masked

2005-11-04 Thread Uwe Ligges
Ettinger, Nicholas wrote: Hello! First time posting here: Here is my code: x - c(1:22) finaloutput=cidrm=NULL finaldiversityoutput=diversitym=NULL diversityinfo=read.table(Diversity_info.txt, header=T, sep=\t, row.names=NULL) attach(diversityinfo) diversitynr=nrow(diversityinfo)

[R] Error message: The following object(s) are masked

2005-11-03 Thread Ettinger, Nicholas
Hello! First time posting here: Here is my code: x - c(1:22) finaloutput=cidrm=NULL finaldiversityoutput=diversitym=NULL diversityinfo=read.table(Diversity_info.txt, header=T, sep=\t, row.names=NULL) attach(diversityinfo) diversitynr=nrow(diversityinfo) diversitytemp -

[R] Error Message - Error: symbol print-name too long

2005-09-26 Thread Carl Anderson
Dear All, I write to ask for information regarding the error message: Error: symbol print-name too long. I am afraid that I can't include any code to help with any further diagnosis of the problem as the code is far too long to be of any use, and I have not been able to re-create the problem

Re: [R] Error Message - Error: symbol print-name too long

2005-09-26 Thread Duncan Temple Lang
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 You aren't giving us much to go on, so I can only make a very wild guess. Check that your file doesn't have a stray ` character in it. R will start reading from that point on and try to make this an internal symbol. If it doesn't find the closing

Re: [R] Error Message - Error: symbol print-name too long

2005-09-26 Thread Carl Anderson
: Tuesday, September 27, 2005 12:31 AM Subject: Re: [R] Error Message - Error: symbol print-name too long -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 You aren't giving us much to go on, so I can only make a very wild guess. Check that your file doesn't have a stray ` character in it. R

Re: [R] error message running R2WinBUGS

2005-07-28 Thread Uwe Ligges
a Binomial distribution with n=100 (hence impossible!). And that's what the WinBUGS (NOT R!) error message tells you. Uwe Ligges qi zhang wrote: *Dear R-user, * I try to run Winbugs from R using bugs function in R2WinBUGS.My model works well in Winbugs except that I can't get DIC

[R] error message running R2WinBUGS

2005-07-27 Thread qi zhang
*Dear R-user, * I try to run Winbugs from R using bugs function in R2WinBUGS.My model works well in Winbugs except that I can't get DIC. Since I don't need DIC, when I try to run Winbugs from R , I set DIC=FALSE. My model is as following: model { for (i in 1:N) { for(j in 1 : T ) { x[i, j] ~

Re: [R] Error message NA/NaN/Inf in foreign function call (arg 6) when using knn()

2005-07-08 Thread Uwe Ligges
Kerri-Ann Norton wrote: I am trying to use knn to do a nearest neighbor classification. I tried using my dataset and got an error message so I used a simple example to try and understand what I was doing wrong and got the same message. Here is what I typed into R: try [,1] [,2] [,3]

[R] Error message NA/NaN/Inf in foreign function call (arg 6) when using knn()

2005-07-06 Thread Kerri-Ann Norton
I am trying to use knn to do a nearest neighbor classification. I tried using my dataset and got an error message so I used a simple example to try and understand what I was doing wrong and got the same message. Here is what I typed into R: try [,1] [,2] [,3] [,4] r A A T G r A A T

[R] Error message from pamr

2005-06-17 Thread luk
Hi, I got the fowllowing error message when I run pamr. Could you please advise me what does this error mean? Many thanks -- mydata - pamr.from.excel(datgrp4, 352, sample.labels=TRUE) Read 812768 items Read in 2307 genes Read in 350 samples Read in 350 sample labels Make

Re: [R] Error message from pamr

2005-06-17 Thread Uwe Ligges
luk wrote: Hi, I got the fowllowing error message when I run pamr. Could you please advise me what does this error mean? Many thanks -- mydata - pamr.from.excel(datgrp4, 352, sample.labels=TRUE) Read 812768 items Read in 2307 genes Read in 350 samples

[R] Error message glmmPQL

2005-05-17 Thread Pedro Torres Saavedra
Hi, I'm fitting a model for two-nested binay data in glmmPQL function but I have this error message: Error in solve.default(estimates[dimE[1] - (p:1), dimE [2] - (p:1), drop = FALSE]) : system is computationally singular: reciprocal condition number = 1.14416e-018. How do I can solve this

[R] Error message from vignette strucchange-intro example

2004-11-05 Thread Thomas Schnhoff
Hello, I am just studying the following example from vignette: strucchange-intro, contineousely ending up in an error. This is the given code: 1. library(strucchange) 2. data(USIncExp) 3. if (!package:stats %in% search()) library(ts) 4. USIncExp2 - window(USIncExp, start = c(1985, 12))

Re: [R] Error message from vignette strucchange-intro example

2004-11-05 Thread Achim Zeileis
Thomas: I am just studying the following example from vignette: strucchange-intro, With problems like this, please contact the package maintainer, or at least Cc. contineousely ending up in an error. This is the given code: 1. library(strucchange) 2. data(USIncExp) 3. if

Re: [R] Error Message: MCMCpack and coda

2004-11-01 Thread Andrew D. Martin
Robin, This is a problem with coda's mcmc summary method. I suspect it is in the spectrum0() call therein, but I don't know for sure. For your immediate purposes you could extract the posterior density sample as a matrix from the mcmc object and manually compute quantities of interest. Best,

[R] Error Message: MCMCpack and coda

2004-10-31 Thread rbest1
Hello All, I'm trying to run a one-dimenional irt model using the packages MCMC and coda on a rather large set of roll-call voting data with many missing observations. Here's a sample of the code: Post10- MCMCirt1d (Italy10, burnin = 1000, mcmc=5, thin=100, verbose=TRUE, theta.constraints =

Re: [R] Error Message: MCMCpack and coda

2004-10-31 Thread Prof Brian Ripley
On Sun, 31 Oct 2004 [EMAIL PROTECTED] wrote: Hello All, I'm trying to run a one-dimenional irt model using the packages MCMC and coda on a rather large set of roll-call voting data with many missing observations. Here's a sample of the code: Post10- MCMCirt1d (Italy10, burnin = 1000,

[R] Error message in mclust

2004-10-19 Thread Brian Newquist
I keep on receiving the message below after submitting the following line using the mclust package. m2 is a 99 X 1 column vector. * em(modelName = E, m2, mu = c(25, 50), sigmasq=10, pro = c(0.4, 0.6)) Error in as.double.default(data) : (list) object cannot be coerced to double.

Re: [R] Error message in mclust

2004-10-19 Thread Sundar Dorai-Raj
Brian Newquist wrote: I keep on receiving the message below after submitting the following line using the mclust package. m2 is a 99 X 1 column vector. * em(modelName = E, m2, mu = c(25, 50), sigmasq=10, pro = c(0.4, 0.6)) Error in as.double.default(data) : (list) object cannot be

Re: [R] Error message in function mars() in package mda

2004-08-11 Thread Martin Maechler
Jude == Jude Ryan [EMAIL PROTECTED] on Tue, 10 Aug 2004 15:56:38 -0400 writes: Jude Hi, I am using function mars() in package mda to find Jude knots in a whole bunch of predictor variables. I hope Jude to be able to replicate all or some of the basis Jude functions that the

[R] Error message in function mars() in package mda

2004-08-10 Thread Jude Ryan
Hi, I am using function mars() in package mda to find knots in a whole bunch of predictor variables. I hope to be able to replicate all or some of the basis functions that the MARS software from Salford Systems creates. When I ran mars() on a small dataset, I was able to get the knots.

Re: [R] Error message handling

2004-06-24 Thread Prof Brian Ripley
On Wed, 23 Jun 2004 [EMAIL PROTECTED] wrote: Dear, R experts. Does anybody have experience with 'optim' function? Yes. I have an error message as the following. Error in optim(transcoefs, fn = hfdeviance, gr = hfdeviance.grad, method = BFGS, : initial value in vmmin is not finite I

[R] Error message handling

2004-06-23 Thread Kang . Changku
Dear, R experts. Does anybody have experience with 'optim' function? I have an error message as the following. Error in optim(transcoefs, fn = hfdeviance, gr = hfdeviance.grad, method = BFGS, : initial value in vmmin is not finite I want to make a comment when this happen. Is there way I

[R] error message

2004-06-07 Thread Tim York
I received the below error using UNIX R. Could someone instruct me on helpful batch options to avoid this please? ERROR: cannot allocate vector of size 32kb __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help

RE: [R] error message

2004-06-07 Thread Liaw, Andy
The message says at some point in the calculation, R tries to get about 312MB of memory and was not able to. Maybe try increasing the amount of virtual (or physical) memory in your system? Andy From: Tim York I received the below error using UNIX R. Could someone instruct me on helpful

[R] error message in help.search

2004-04-22 Thread Tomo Eguchi
Hello, I looked around but couldn't find solutions for my problem. I downloaded v.1.9 and the patched version for windows. I use Windows XP professional with AMD Athlon XP. When I use help.search() function, I get the following error message: Error in .readRDS(contentsFile) : can't read

[R] Error message during debug

2004-04-20 Thread Gabor Grothendieck
In R 1.9.0 on Windows XP Pro I get an error if I try to debug the identity function f shown: f - function(x)x debug(f) f(1) debugging in: f(1) Error in f(1) : Unimplemented feature in eval R.version.string [1] R version 1.9.0, 2004-04-12 Without debuggging its ok.

Re: [R] Error message during debug

2004-04-20 Thread Sundar Dorai-Raj
Gabor Grothendieck wrote: In R 1.9.0 on Windows XP Pro I get an error if I try to debug the identity function f shown: f - function(x)x debug(f) f(1) debugging in: f(1) Error in f(1) : Unimplemented feature in eval R.version.string [1] R version 1.9.0, 2004-04-12 Without debuggging

Re: [R] Error message during debug

2004-04-20 Thread Gabor Grothendieck
Sundar Dorai-Raj sundar.dorai-raj at PDF.COM writes: : : Gabor Grothendieck wrote: : : In R 1.9.0 on Windows XP Pro I get an error if I try to : debug the identity function f shown: : :f - function(x)x :debug(f) :f(1) : debugging in: f(1) : Error in f(1) : Unimplemented

[R] error message in mle function

2004-04-19 Thread Bill Shipley
I am getting an error message concerning the estimation of confidence intervals when fitting a mixed model and don't know what the problem is, or its solution. Just to provide context: the model is describing the effects of age, exp(age), harvest age, and climate variables on bighorn horn

Re: [R] error message in mle function

2004-04-19 Thread Spencer Graves
Is one of your variance components essentially estimating zero? If you check the numbers, delete the smallest one, and then do anova comparing the two fits, you might find that the one you deleted was not statistically significant. If I'm not mistaken, lme estimates the logarithms

[R] Error message - what does it mean???

2004-03-09 Thread Monica Palaseanu-Lovejoy
Hi, I am trying to calculate mahalanobis distances for a matrix x with n*p variables. I am getting the following error: md2 - mahalanobis(x, center, cov) Error in solve.default(cov, tol = tol.inv) : system is computationally singular: reciprocal condition number = 2.11165e-009 What

Re: [R] Error message - what does it mean???

2004-03-09 Thread Prof Brian Ripley
On Tue, 9 Mar 2004, Monica Palaseanu-Lovejoy wrote: Hi, I am trying to calculate mahalanobis distances for a matrix x with n*p variables. I am getting the following error: md2 - mahalanobis(x, center, cov) Error in solve.default(cov, tol = tol.inv) : system is computationally

[R] error message from regsubsets

2004-02-06 Thread Rajarshi Guha
Hi, I'm using regsubsets and it works fine when nvmax = 4. However when I go for any value above 4, I get the error: Warning message: XHAUST returned error code -999 in: leaps.exhaustive(a, really.big = really.big) I'm calling regsubsets as: lp -

Re: [R] error message

2004-01-24 Thread forkusam
I am trying to calculate n, using power.t.test power.t.test(n=NULL,delta=delta, sd=sigmaEins, sig.level= alpha, power=power, type=c(two.sample), alternative=c(two.sided)) The values of the parameter are read in from a file. I have no idea what the error message means. --- Peter Dalgaard

Re: [R] error message

2004-01-24 Thread Uwe Ligges
On Sat, 24 Jan 2004, forkusam wrote: I am trying to calculate n, using power.t.test power.t.test(n=NULL,delta=delta, sd=sigmaEins, sig.level= alpha, power=power, type=c(two.sample), alternative=c(two.sided)) The values of the parameter are read in from a file. I have no idea what

[R] error message

2004-01-21 Thread forkusam
Hi, Can someone please tell me what such an error message could mean. i.e where a problem must have arised. Error in uniroot(function(n) eval(p.body) - power, c(2, 1e+07)) : f() values at end points not of opposite sign Thank you cilver = = Sylvie B. Forkusam

Re: [R] error message

2004-01-21 Thread Peter Dalgaard
forkusam [EMAIL PROTECTED] writes: Hi, Can someone please tell me what such an error message could mean. i.e where a problem must have arised. Error in uniroot(function(n) eval(p.body) - power, c(2, 1e+07)) : f() values at end points not of opposite sign Looks like the innards

[R] error message in plot(aov-object) -- repost

2004-01-16 Thread Pascal A. Niklaus
Hi all, I posted this question several days ago, but did not get any answer until now. Since I still have no clue about the source of this error message, I repost a description of the problem including some code: A student at our institute fitted an aov model, and got the following error

Re: [R] error message in plot(aov-object) -- repost

2004-01-16 Thread Uwe Ligges
Pascal A. Niklaus wrote: Hi all, I posted this question several days ago, but did not get any answer until now. Since I still have no clue about the source of this error message, I repost a description of the problem including some code: A student at our institute fitted an aov model, and got

Re: [R] error message in plot(aov-object) -- repost

2004-01-16 Thread Peter Dalgaard
Uwe Ligges [EMAIL PROTECTED] writes: plot.lm() produces the error message, in particular the lines hii - lm.influence(x, do.coef = FALSE)$hat which appears to be 1 in some cases, and rs - r.w/(s * sqrt(1 - hii)) (you get a division by zero and the outcome is Inf, hence it's

[R] error message in plot(aov-object)

2004-01-14 Thread Pascal A. Niklaus
Hi all, A student at our institute asked me for help with the following problem: After fitting an aov model, she wanted diagnostic plots, and got the following error message: plot(p.aov) Hit Return to see next plot: Hit Return to see next plot: Error in plot.window(xlim, ylim, log, asp, ...)

[R] error message in simulation

2003-10-28 Thread Tu Yu-Kang
Dear R-users, I am a dentist (so forgive me if my question looks stupid) and came across a problem when I did simulations to compare a few single level and two level regressions. The simulations were interrupted and an error message came out like 'Error in MEestimate(lmeSt, grps) :

Re: [R] error message in simulation

2003-10-28 Thread Thomas W Blackwell
Yu-Kang - Simulations by their nature use randomly generated data. Sometimes the random data doesn't contain enough information to fully determine the parameter estimates for one iteration or another. It seems likely that that is what happened here. The design matrix is singular for one

Re: [R] Error message in non linear regression model

2003-09-08 Thread Douglas Bates
anne [EMAIL PROTECTED] writes: Hello! Trying to fit a non linear regression model modF-nlsModel(kf~3*alpha*epsilon^P, dat, list(alpha=ALPHA)) You should use nls, not nlsModel. Also, if P is fixed then this is a linear regression model. Why use nonlinear regression.

Re: [R] error message in nlm()

2003-09-01 Thread Thomas W Blackwell
Johannes - There's something special about the way control parameters are accepted by nlm() and nlme(). Try searching very recent help archives for nlme() or control. Try duplicating exactly one of the examples at the bottom of the help page help(nlm). My recollection is that the parameter

[R] error message in fitdistr

2003-08-14 Thread vincent . stoliaroff
Hi R lovers Here is a numerical vector test test [1] 206 53 124 112 92 77 118 75 48 176 90 74 107 126 99 84 114 147 99 114 99 84 99 99 99 99 99 104 1 159 100 53 [33] 132 82 85 106 136 99 110 82 99 99 89 107 99 68 130 99 99 110 99 95 153 93 136 51 103 95 99

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