[R-sig-eco] Command pch in lattice package

2008-07-10 Thread Manuel Spínola
character in the vector (pch= c(1, 3)) to the first level in the grouping variable (year). Thank you very much in advance. Best, Manuel Spínola -- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA

[R-sig-eco] t-test with inverse variance weighting in R

2008-08-19 Thread Manuel Spínola
of analysis? I am trying to get the confidence interval of the difference (I am not interested in the t and P values). Thank you very much in advance. Best, Manuel Spínola -- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000

[R-sig-eco] Problems with vegdist in Vegan

2008-11-27 Thread Manuel Spínola
be meaningless in method bray 2: In vegdist(avesp.esp, dist = jaccard) : missing values in results I have sites (point counts) without species, is it a problem? Thank you very much in advance. Best, Manuel Spínola -- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y Manejo de Vida

[R-sig-eco] Intepreting a plot from a constrained NMDS

2008-12-07 Thread Manuel Spínola
to interpret the resulting plot in the same way that a constrained ordination, for example CCA? Thank you very much in advance. Best, Manuel -- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA

Re: [R-sig-eco] testing for distribution

2009-05-13 Thread Manuel Spínola
Dear Jacob, May be you can use cluster sampling or adaptive cluster sampling (Design-based estimation) to get a density estimate. Best, Manuel Spínola Capelle, Jacob wrote: Dear all, I have a kind of a theoretical question from which I hope it might interest you and hopefully can help me

[R-sig-eco] Analyzing frequencies in R

2009-06-08 Thread Manuel Spínola
value when analyzing frequencies in R? Is it possible to obtain standardized Pearson residuals in this situation? Thank you very much in advance. Best, Manuel Spínola -- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000

Re: [R-sig-eco] Statistics applied to Geography using R

2009-07-04 Thread Manuel Spínola
Message- From: Manuel Spínola Sent: 02.07.2009, 23:17 To: r-sig-ecology@r-project.org Subject: [R-sig-eco] Statistics applied to Geography using R Dear list members, Do you know any references for statistics applied to geography that are in some way related to R? I think it will be ok also

[R-sig-eco] Repeated measures model in R

2009-09-15 Thread Manuel Spínola
be the subject) Year: from 2002 to 2007 My data set is unbalanced (the counties do not have information for all the years). Thank you very much in advance. Best, Manuel Spínola -- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000

Re: [R-sig-eco] multiple regression

2010-02-08 Thread Manuel Spínola
/software.html Best, Manuel Spínola -- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.ac.cr mspinol...@gmail.com Teléfono: (506) 2277-3598 Fax: (506) 2237-7036 Peter Solymos wrote: Dear

[R-sig-eco] repeated measures design in R

2010-02-10 Thread Manuel Spínola
, is this the way to analyze a repeated measure design in R? The counties (localidad) are all the county that I am interested, is that still random? Thank you very much in advance. Best, Manuel Spínola -- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y Manejo de Vida

[R-sig-eco] Zero-truncated Poisson model in R

2010-05-16 Thread Manuel Spínola
Dear list members, Is there any function to do zero-truncated poisson or zero-truncated negative binomail in R? Thank you very much in advance. Best, Manuel Spínola -- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350

[R-sig-eco] Changing the reference level of a factor

2010-05-18 Thread Manuel Spínola
, Adjusted R-squared: 0.4525 F-statistic: 5.545 on 2 and 9 DF, p-value: 0.02696 Any idea why? Best, Manuel Spínola -- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.ac.cr mspinol

[R-sig-eco] Modeling when all variables are categoricalb

2010-07-04 Thread Manuel Spínola
with a saturated model? How is the way to model this type of data (1 categorical response variable and 6 explanatory factors)? I also used classification trees for the data but the error is bigger after the first split. Best, Manuel -- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y

[R-sig-eco] Function predict

2010-07-07 Thread Manuel Spínola
-- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.ac.cr mspinol...@gmail.com Teléfono: (506) 2277-3598 Fax: (506) 2237-7036 ___ R-sig-ecology mailing

[R-sig-eco] Transforming logits to probabilities

2010-07-08 Thread Manuel Spínola
'.' 0.1 ' ' 1 (Dispersion parameter for binomial family taken to be 1) Null deviance: 433.04 on 319 degrees of freedom Residual deviance: 424.30 on 314 degrees of freedom (25 observations deleted due to missingness) AIC: 436.3 Number of Fisher Scoring iterations: 4 -- Manuel Spínola

[R-sig-eco] Logistic regression plot

2010-08-17 Thread Manuel Spínola
for each variable in the model. Thank you very much in advance. Best, Manuel -- Manuel Spínola, Ph.D. Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.ac.cr mspinol...@gmail.com Teléfono: (506) 2277-3598 Fax

[R-sig-eco] se and confidence limits for predictors from a model output not obtained in R

2010-10-13 Thread Manuel Spínola
the se (and the confidence limits) for different predictors in the model to obtain a plot for each predictor like the effect package does. Thank you very much in advance. Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad

[R-sig-eco] Species richness in R

2011-02-11 Thread Manuel Spínola
at each site (i.e., the number of visits to the sites varies)? I am trying to get also an estimate of the detection probability, but it seems that this parameter is not included in those functions. Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida

[R-sig-eco] Error with raup distance in metaMDS

2011-03-26 Thread Manuel Spínola
message: In distfun(comm, method = distance, ...) : data have empty species which influence the results im method raup Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin

Re: [R-sig-eco] [POSIBLE SPAM] Re: Error with raup distance in metaMDS

2011-03-27 Thread Manuel Spínola
your data. That is only informational, and not an error. Cheers, Jari Oksanen -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.ac.cr mspinol...@gmail.com Teléfono: (506) 2277

Re: [R-sig-eco] Error with raup distance, in metaMDS

2011-03-29 Thread Manuel Spínola
) will influence your data. That is only informational, and not an error. Cheers, Jari Oksanen ___ R-sig-ecology mailing list R-sig-ecology@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-ecology -- *Manuel Spínola, Ph.D.* Instituto

[R-sig-eco] Sites names with spaces in ordiplot

2011-03-31 Thread Manuel Spínola
Dear list members, I would like to include sites names with blank spaces in an ordiplot for an nmds (in vegan). How I do that? Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA

Re: [R-sig-eco] Sites names with spaces in ordiplot

2011-04-01 Thread Manuel Spínola
Gavin and Jari, thank you very much. Actually, I am interested in both, sites and species. I have 3000 species (tropical forest trees) and I am trying to read the txt file with read.table. I tried also read.delim, but I don't know how to bring the sites names in the plot. I guess now I have

Re: [R-sig-eco] Sites names with spaces in ordiplot

2011-04-01 Thread Manuel Spínola
Thank you very much Gavin. I understand now. Best, Manuel On 01/04/2011 05:29 a.m., Gavin Simpson wrote: On Fri, 2011-04-01 at 05:14 -0600, Manuel Spínola wrote: Gavin and Jari, thank you very much. Actually, I am interested in both, sites and species. I have 3000 species (tropical

[R-sig-eco] subsetting data in R

2011-04-24 Thread Manuel Spínola
for influencia. How can I make a complete new object with only the observations for AID and that the only level for influencia is indeed AID? Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia

Re: [R-sig-eco] subsetting data in R

2011-04-24 Thread Manuel Spínola
was creating a new data frame with only AID as a level for influencia. How can I make a complete new object with only the observations for AID and that the only level for influencia is indeed AID? Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida

Re: [R-sig-eco] subsetting data in R

2011-04-24 Thread Manuel Spínola
Thank you Christian. Following your suggestion I got the following result, pa2 = subset(pa, influencia==AP) pa2$influencia-as.factor(pa2$influencia) levels(pa$influencia) [1] AID AII AP On 24/04/2011 07:42 a.m., Christian Parker wrote: You are creating a new object, but the columns that

Re: [R-sig-eco] subsetting data in R

2011-04-24 Thread Manuel Spínola
Thank you very much Gustavo. That works. Manuel On 24/04/2011 08:30 a.m., Gustavo Carvalho wrote: pa2- subset(pa, influencia==AP) pa2$influencia- factor(pa2$influencia) levels(pa2$influencia) On Sun, Apr 24, 2011 at 11:24 AM, Manuel Spínolamspinol...@gmail.com wrote: Thank you very

Re: [R-sig-eco] subsetting data in R

2011-04-24 Thread Manuel Spínola
Thank you for all the responses. Is there a way to do a complete data set from an object in R? I have a data set with more than 3000 columns. The subsetting is ok but it could be dangerous if you are using other factors to do some analysis as you need to specify the levels for all your factors

Re: [R-sig-eco] subsetting data in R

2011-04-26 Thread Manuel Spínola
AM, Manuel Spínola wrote: Thank you for all the responses. Is there a way to do a complete data set from an object in R? I have a data set with more than 3000 columns. The subsetting is ok but it could be dangerous if you are using other factors to do some analysis as you need to specify

[R-sig-eco] Change the text in the strips of a Lattice plot

2011-06-24 Thread Manuel Spínola
) How can I change the names of the levels of the 2 conditioning variables in the strip? I want to use: Enfriado and No enfriado instead of chilled and nonchilled for Treatmente, and A and B instead of Quebec and Mississippi for Type. Thank you very much in advance. Manuel -- *Manuel Spínola

Re: [R-sig-eco] Change the text in the strips of a Lattice plot

2011-06-24 Thread Manuel Spínola
* Treatment, groups = Plant, type = b, lty = rep(1:3, 4), strip = strip.custom( var.name = c(Type, Treatment ), strip.names = c(T,T), style = 3), data = CO2) Johannes On Fri, Jun 24, 2011 at 8:18 AM, Manuel Spínola mspinol...@gmail.com wrote: Dear list members, I am trying the following

[R-sig-eco] Predict with 2 factors in an additive model

2011-10-14 Thread Manuel Spínola
) 1 2 1.0460148 0.9468983 Thank you very much in advance. Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.ac.cr mspinol...@gmail.com Teléfono: (506

[R-sig-eco] Fwd: Landscape ecology in R

2012-03-11 Thread Manuel Spínola
-- Forwarded message -- From: Manuel Spínola mspinol...@gmail.com Date: 2012/3/11 Subject: Re: [R-sig-eco] Landscape ecology in R To: Sarah Goslee sarah.gos...@gmail.com Thank you Sarah and Stephen, I am in contact with Paul Galpern who developed some tutorials on landscape

Re: [R-sig-eco] Landscape ecology in R

2012-03-12 Thread Manuel Spínola
Sefick sas0...@auburn.edu Third hit in a google search for: landscape ecology R http://nricaribou.cc.umanitoba.ca/R/ On 03/09/2012 04:53 PM, Manuel Spínola wrote: Dear list members, I am looking for any reference or material on landscape ecology analysis in R. Thank you very much

Re: [R-sig-eco] Using partykit::ctree with observations that are spatially autocorrelated

2012-03-22 Thread Manuel Spínola
is that the practitioner that will be presented the results won't be very happy with regression-cofficients, model-comparisons, AIC and friends. contrary, ctree would yield an intuitive and simple result which i would fancy for this purpose! yours, kay 2012/3/21 Manuel Spínola mspinol...@gmail.com

[R-sig-eco] R and WinBUGS

2012-03-29 Thread Manuel Spínola
? Is R not capable of doing the same type of analysis? Any input will be appreciated. Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.ac.cr mspinol...@gmail.com

Re: [R-sig-eco] NMDS with metaMDS from vegan following an example from Numerical Ecology with R

2012-06-12 Thread Manuel Spínola
Thank you very much Jari, Using weakties = FALSE it works very well. The results are similar to the book. Best, Manuel e.mds = metaMDS(especies, distance = bray, weakties = FALSE) Run 0 stress 0.1088505 Run 1 stress 0.113103 Run 2 stress 0.1356066 Run 3 stress 0.1088552 ... procrustes: rmse

[R-sig-eco] Carrying capacity in R

2012-06-28 Thread Manuel Spínola
Dear list members, Is there any package (and function) to assess carrying capacity for biological population? Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin

Re: [R-sig-eco] Carrying capacity in R

2012-06-29 Thread Manuel Spínola
2012/6/28 Manuel Spínola mspinol...@gmail.com: Dear list members, Is there any package (and function) to assess carrying capacity for biological population? Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre

[R-sig-eco] Re-arrange data frame

2012-06-29 Thread Manuel Spínola
item2 5 4 item3 3 5 item3 4 3 Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.ac.cr mspinol...@gmail.com Teléfono: (506) 2277-3598 Fax

[R-sig-eco] Recode several variables with conditions in a data frame

2012-07-03 Thread Manuel Spínola
I guess I am not setting the condition in a proper way. Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.ac.cr mspinol...@gmail.com Teléfono: (506) 2277-3598 Fax

Re: [R-sig-eco] Recode several variables with conditions in a data frame

2012-07-03 Thread Manuel Spínola
(2, 10), y=c(2, 0)) xx[xx!=0]=1 xx x y 1 1 1 2 1 0 Bret On 7/3/2012 8:12 PM, Manuel Spínola wrote: Dear list members, I want to recode a data frame but do it for several variables at the same time. I want to give all the values or equal than 1 a value of 1 and all the remaining

Re: [R-sig-eco] Recode several variables with conditions in a data frame

2012-07-03 Thread Manuel Spínola
], yy) bret On 7/3/2012 9:18 PM, Manuel Spínola wrote: Thank you Bret. What if I need to leave out some variables from my data frame. I have 22 variables and I need to leave the 2 first variables out of the condition. Best, Manuel 2012/7/3 Bret Collier b...@tamu.edu Manuel

[R-sig-eco] Example on trend analysis for biological monitoring

2012-07-14 Thread Manuel Spínola
Dear list members, Is there any simple example for teaching purposes on how to use R to analyze a time series in a biological monitoring context? Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000

Re: [R-sig-eco] Example on trend analysis for biological monitoring

2012-07-15 Thread Manuel Spínola
:05 AM, Manuel Spínola wrote: Dear list members, Is there any simple example for teaching purposes on how to use R to analyze a time series in a biological monitoring context? Best, Manuel ___ R-sig-ecology mailing listR-sig-ecology@r

[R-sig-eco] Understanding cbind

2012-07-20 Thread Manuel Spínola
,] 0 0 0 0 0 0 [2,] 0 1 0 0 1 0 [3,] 0 0 0 0 0 0 [4,] 0 1 1 1 1 1 [5,] 1 1 1 0 1 0 [6,] 1 0 0 0 0 1 Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto

Re: [R-sig-eco] Comparing survival curves

2012-09-06 Thread Manuel Spínola
Adrian, You can take a look at the R package wild1. Best, Manuel Spínola 2012/9/6 AdRiAnA HuMaNeS adrihuma...@yahoo.com Hi Rlisters: I'm doing survival analysis comparing 8 populations. I've used the survdiff function for comparing survival curves and the result I obtained says

Re: [R-sig-eco] Replacing values in a data frame

2012-10-25 Thread Manuel Spínola
Alberta, T6G 2E9, Canada AB soly...@ualberta.ca, Ph 780.492.8534, http://psolymos.github.com Alberta Biodiversity Monitoring Institute, http://www.abmi.ca Boreal Avian Modelling Project, http://www.borealbirds.ca 2012/10/25 Manuel Spínola mspinol...@gmail.com: Dear list members, I want

[R-sig-eco] qAIC

2013-01-22 Thread Manuel Spínola
) val [1] NA Thank you very much in advance, Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.ac.cr mspinol...@gmail.com Teléfono: (506) 2277-3598 Fax: (506) 2237

[R-sig-eco] Very large dispersion parameter in a negative binomial model

2013-02-03 Thread Manuel Spínola
.: 1428117 Warning while fitting theta: iteration limit reached 2 x log-likelihood: -59.058 Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.ac.cr mspinol

Re: [R-sig-eco] Very large dispersion parameter in a negative binomial model

2013-02-03 Thread Manuel Spínola
Postdoctoral Researcher, Ponciano Lab Biology Department, University of Florida http://people.biology.ufl.edu/mbrooks On 3 Feb 2013, at 10:16 AM, Manuel Spínola wrote: Dear list members, I am fitting a negative binomial model but I get a very large dispersion parameter. Why is that? quine.nb2

Re: [R-sig-eco] How to remove space among columns

2013-03-27 Thread Manuel Spínola
Thank you very much to all that answered my question, some one of you asked me to be more specific, here is my question again: I hava a data frame: col1 col2 col3 col4 col5 col6 01 1 0 ac 10 0 0 ad 01 1 1 bd I want to

[R-sig-eco] Error when installing packages in R.3.0.2 (Windows 7)

2013-11-08 Thread Manuel Spínola
/Rcmdr/doc/Commander-ru.pdf': Permission denied Any idea how to solve this issue? Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.ac.cr mspinol...@gmail.com Teléfono

Re: [R-sig-eco] report out by t.test

2014-03-24 Thread Manuel Spínola
___ R-sig-ecology mailing list R-sig-ecology@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-ecology -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA

Re: [R-sig-eco] Question on unexpected regression results

2014-07-30 Thread Manuel Spínola
Dear Bruce, Besides any other problems I can see that you consider FA as a factor and that could be a problem with your data set. Manuel 2014-07-30 7:10 GMT-06:00 Bruce Miller batsnc...@gmail.com: Hi all, Sorry this is a bit long, but the explanation of what I want to do needs to be clear

Re: [R-sig-eco] Package to analyse population time series (trend analysis)

2016-10-19 Thread Manuel Spínola
or other aspects I > haven't yet dealt with. > > A bit more information about what you have in terms of data, and about the > questions you are interested within the broad definition of "trend" might > get you informed answers. > > Tom 2 > > > > On Wed, Oct 1

[R-sig-eco] Repeated mesaures mixed model in R

2016-11-01 Thread Manuel Spínola
ble ~ occasion * treatment + (occasion | plot/subplot) Is the model parameterization correct? Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.cr <mspin...@una

[R-sig-eco] mvpart alternatives and machine learning multivariate analysis

2017-06-23 Thread Manuel Spínola
relationships? Thank you very much in advance, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.cr <mspin...@una.ac.cr> mspinol...@gmail.com Teléfono: (506) 8706 - 4662 Pe

Re: [R-sig-eco] mvpart alternatives and machine learning multivariate analysis

2017-06-24 Thread Manuel Spínola
hics grDevices utils datasets methods base >> > >> > other attached packages: >> > [1] mvpart_1.6-2 >> > >> > loaded via a namespace (and not attached): >> > [1] compiler_3.4.0 >> >> >> However, there are

Re: [R-sig-eco] mvpart alternatives and machine learning multivariate analysis

2017-06-24 Thread Manuel Spínola
8 >> > >> > attached base packages: >> > [1] stats graphics grDevices utils datasets methods base >> > >> > other attached packages: >> > [1] mvpart_1.6-2 >> > >> > loaded via a namespace (and not attached): >

Re: [R-sig-eco] mvpart alternatives and machine learning multivariate analysis

2017-06-24 Thread Manuel Spínola
Thank you Ralf, But I guess is not going to be newer versions and could be incompatible with newer version of R, so at some moment there will be no accessibility to the package. Manuel 2017-06-24 5:25 GMT-06:00 Ralf Schäfer : > Dear Manuel > > despite it has been

[R-sig-eco] How to compare 2 independent estimates in R

2017-05-26 Thread Manuel Spínola
the effect size (the difference between estimates) with the 95% confidence limits. Is there any package that allow me to do that? Best, Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin

[R-sig-eco] Machine learning in R for ecology

2017-05-21 Thread Manuel Spínola
-- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.cr <mspin...@una.ac.cr> mspinol...@gmail.com Teléfono: (506) 8706 - 4662 Personal website: Lobito de río <https://sites.google

[R-sig-eco] How to include math symbols in a data frame

2017-10-09 Thread Manuel Spínola
0.6, 0.9) table <- data.frame(columna1, columna2, columna3) kable(table) How can I include the math symbol in the table? Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.cr

Re: [R-sig-eco] How to include math symbols in a data frame

2017-10-09 Thread Manuel Spínola
paste("<= ", c(0.3, 0.5, 0.8)) > column3 <- paste("<= ", c(0.5, 0.6, 0.9)) > > table <- data.frame(column1, column2, column3) > > table > > > " > > > > Watch out not to mix English with Spanish while scripting fast. > > > Pura Vida!

Re: [R-sig-eco] UK.AdvancingInRForEcologists.Dec4-8

2017-10-18 Thread Manuel Spínola
ANALYSIS OF SPATIAL ECOLOGICAL DATA USING > R #MVSP > Prof. Pierre Legendre, Dr. Olivier Gauthier - Date and location to be > confirmed > > > -- > Oliver Hooker PhD. > PR statistics > > 2017 publications - > > Ecosystem size predicts eco-morphological variab

Re: [R-sig-eco] UK.AdvancingInRForEcologists.Dec4-8

2017-10-18 Thread Manuel Spínola
d location to be > confirmed > > > -- > Oliver Hooker PhD. > PR statistics > > 2017 publications - > > Ecosystem size predicts eco-morphological variability in post-glacial > diversification. Ecology and Evolution. In press. > > The physiological costs of prey switching reinforce foraging

[R-sig-eco] Mixed model in R

2019-05-21 Thread Manuel Spínola
. Is the following model parameterization appropriate in the lme4 package: mod_adi_01 <- lmer(ADI ~ Season*CoverType + (1 | Point) + (1 | Month) + (1 | Day) + (1 | Hour), data = df_01, REML = FALSE) Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silves

Re: [R-sig-eco] Ecological datasets for teaching statistics

2020-06-18 Thread Manuel Spínola
demy of Science > http://www.bugsmapsandmath.com > > ---*/ > > ________ > From: R-sig-ecology on behalf of > Manuel Spínola > Sent: Thursday, June 18, 2020 1:20 PM > To: r-sig-ecology@r-proj

Re: [R-sig-eco] Ecological datasets for teaching statistics

2020-06-18 Thread Manuel Spínola
0 a las 11:41, Rich Shepard () escribió: > On Thu, 18 Jun 2020, Manuel Spínola wrote: > > > I teach statistics to students in ecology and environmental sciences > > fields and I would like to know if you could point me in the right > > direction of sources of ecolog

Re: [R-sig-eco] Ecological datasets for teaching statistics

2020-06-18 Thread Manuel Spínola
Thank you very much Rich. Manuel El jue., 18 jun. 2020 a las 12:11, Rich Shepard () escribió: > On Thu, 18 Jun 2020, Manuel Spínola wrote: > > > I teach mainly to wildlife ecology students. > > Manuel, > > I'm a stream ecologist/fluvial geomorphologist but have run

Re: [R-sig-eco] Ecological datasets for teaching statistics

2020-06-18 Thread Manuel Spínola
nation of some data and an aching desire for an answer does not > ensure that a reasonable answer can be extracted from a given body of data. > ~ John Tukey > > /////////// > > <https://www.inbo.be>

Re: [R-sig-eco] Ecological datasets for teaching statistics

2020-06-18 Thread Manuel Spínola
Thank you very much Mollie. Manuel El jue., 18 jun. 2020 a las 14:12, Mollie Brooks () escribió: > > > On 18Jun 2020, at 19:58, Manuel Spínola wrote: > > Thank you very much Rich. > > Yes, you are right, is a very broad spectrum. > > I teach mainly to wildlife ecolog

[R-sig-eco] Ecological datasets for teaching statistics

2020-06-18 Thread Manuel Spínola
and multivariate statistics. Manuel Spínola -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.cr mspinol...@gmail.com Teléfono: (506) 8706 - 4662 Personal website: Lobito de río

Re: [R-sig-eco] Ecological datasets for teaching statistics

2020-06-18 Thread Manuel Spínola
842 | mike.mahoney@gmail.com > > > On Thu, Jun 18, 2020 at 2:14 PM Manuel Spínola > wrote: > >> Thank you very much Rich. >> >> Manuel >> >> El jue., 18 jun. 2020 a las 12:11, Rich Shepard (< >> rshep...@appl-ecosys.com>) >>

[R-sig-eco] Appropriate model parameterization in lme4 for spatio-temporal structured data

2021-01-19 Thread Manuel Spínola
(1 | location) + (1 | day/hour/min), data = my_data) Thank you very much in advance. Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA mspin...@una.cr mspinol...@gmail.com Teléfono: (

Re: [R-sig-eco] plot confidence interval binomial glm

2021-05-29 Thread Manuel Spínola
HTML version deleted]] > > ___ > R-sig-ecology mailing list > R-sig-ecology@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-ecology > -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre U

Re: [R-sig-eco] [EXTERNAL] Time to Independence in R

2021-03-03 Thread Manuel Spínola
than empirical estimation form a "continuous" > datastream of limited duration. That approach also helps me think about > the spatial concordance of the correlated errors: which are site-specific, > which are concordant across all of the sites. > > Tom > > -Original Messa

[R-sig-eco] Time to Independence in R

2021-03-03 Thread Manuel Spínola
to take into account the temporal autocorrelation of the data, but I am asking to optimize the data collection, before modeling. Thank you very much in advance. Manuel -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado