Re: [sage-release] Re: Sage 8.9.beta7 released

2019-08-30 Thread Sébastien Labbé


> It does not work. I will try rebuilding from scratch...
>

After rebuilding from scratch from a git clone, the SSL problem disapeared:

┌┐
│ SageMath version 8.9.beta8, Release Date: 2019-08-25   │
│ Using Python 2.7.15. Type "help()" for help.   │
└┘
sage:  oeis([3,7,15,1], max_results=4)
0: A001203: Simple continued fraction expansion of Pi.
1: A240698: Partial sums of divisors of n, cf. A027750.
2: A082495: a(n) = (2^n - 1) mod n.
3: A165416: Irregular array read by rows: The n-th row contains those 
distinct positive integers that each, when written in binary, occurs as a 
substring in binary n.

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Re: [sage-release] Re: Sage 8.9.beta7 released

2019-08-29 Thread Sébastien Labbé


On Wednesday, August 28, 2019 at 4:04:13 AM UTC+2, Samuel Lelievre wrote:
>
>
>
> Le mardi 27 août 2019 22:04:42 UTC+2, Sébastien Labbé a écrit :
>>
>>
>> I reinstalled my openssl which looks recent:
>>
>> (sage-sh) $ openssl version
>> OpenSSL 1.1.1b  26 Feb 2019
>>
>> But this does not fix the issue.
>>
>
> After installing openssl, you need to force-reinstall python.
>
> sage -f python2
> sage -f python3
>
> so that their ssl module gets compiled, taking into account
> the (new) presence of OpenSSL.
>

It does not work. I will try rebuilding from scratch...

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Re: [sage-release] Re: Sage 8.9.beta7 released

2019-08-27 Thread Samuel Lelievre


Le mardi 27 août 2019 22:04:42 UTC+2, Sébastien Labbé a écrit :
>
>
> I reinstalled my openssl which looks recent:
>
> (sage-sh) $ openssl version
> OpenSSL 1.1.1b  26 Feb 2019
>
> But this does not fix the issue.
>

After installing openssl, you need to force-reinstall python.

sage -f python2
sage -f python3

so that their ssl module gets compiled, taking into account
the (new) presence of OpenSSL.


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Re: [sage-release] Re: Sage 8.9.beta7 released

2019-08-27 Thread Sébastien Labbé


On Friday, August 23, 2019 at 6:12:14 PM UTC+2, Sébastien Labbé wrote:
>
>
>
> On Friday, August 23, 2019 at 3:12:54 PM UTC+2, Eric Gourgoulhon wrote:
>>
>> Hello Sebastien,
>>
>> This works for me on Ubuntu 18.04, with both Python 2 and 3 versions of 
>> Sage 8.9.beta7.
>> Maybe you should upgrade your SSL?
>>
>
> Ok I will check this out next week!
>

I reinstalled my openssl which looks recent:

(sage-sh) $ openssl version
OpenSSL 1.1.1b  26 Feb 2019

But this does not fix the issue.

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[sage-release] Re: Sage 8.9.beta7 released

2019-08-25 Thread Emmanuel Charpentier
FWIW, on the same machine, I upgraded a 8.8 installation to 8.9.beta7 (I 
wanted to check sometong about the R interface). Ptestlong got three 
failures:

--
sage -t --long --warn-long 155.5 
src/sage/tests/books/computational-mathematics-with-sagemath/graphique_doctest.py
  
# 1 doctest failed
sage -t --long --warn-long 155.5 src/sage/tests/gap_packages.py  # 1 
doctest failed
sage -t --long --warn-long 155.5 src/sage_setup/optional_extension.py  # 1 
doctest failed
--

The first one (already multireported) is transient, the other two are 
permanent, but seemingly cosmetic. Details :

charpent@zen-book-flip:/usr/local/sage-8$ sage -t --long --warn-long 155.5 
src/sage/tests/gap_packages.py 
Running doctests with ID 2019-08-25-15-41-16-ec0ea2a1.
Git branch: develop
Using 
--optional=build,dochtml,dot2tex,fricas,gap_packages,giacpy_sage,libsemigroups,memlimit,mpir,python2,sage
Doctesting 1 file.
sage -t --long --warn-long 155.5 src/sage/tests/gap_packages.py
**
File "src/sage/tests/gap_packages.py", line 8, in sage.tests.gap_packages
Failed example:
test_packages(pkgs, only_failures=True)# optional - gap_packages
Expected:
  Status   Package   GAP Output
++-++
Got:
#I  method installed for Matrix matches more than one declaration
  Status   Package   GAP Output
++-++
**
1 item had failures:
   1 of   5 in sage.tests.gap_packages
[11 tests, 1 failure, 2.90 s]
--
sage -t --long --warn-long 155.5 src/sage/tests/gap_packages.py  # 1 
doctest failed
--
Total time for all tests: 2.9 seconds
cpu time: 2.5 seconds
cumulative wall time: 2.9 seconds
charpent@zen-book-flip:/usr/local/sage-8$ sage -t --long --warn-long 155.5 
src/sage_setup/optional_extension.py 
Running doctests with ID 2019-08-25-15-42-00-8f82ff2e.
Git branch: develop
Using 
--optional=build,dochtml,dot2tex,fricas,gap_packages,giacpy_sage,libsemigroups,memlimit,mpir,python2,sage
Doctesting 1 file.
sage -t --long --warn-long 155.5 src/sage_setup/optional_extension.py
**
File "src/sage_setup/optional_extension.py", line 72, in 
sage_setup.optional_extension.OptionalExtension
Failed example:
print(ext.__class__.__name__)
Expected:
Extension
Got:
CythonizeExtension
**
1 item had failures:
   1 of  10 in sage_setup.optional_extension.OptionalExtension
[12 tests, 1 failure, 0.25 s]
--
sage -t --long --warn-long 155.5 src/sage_setup/optional_extension.py  # 1 
doctest failed
--
Total time for all tests: 0.3 seconds
cpu time: 0.0 seconds
cumulative wall time: 0.2 seconds

HTH,

Le lundi 19 août 2019 14:40:38 UTC+2, Emmanuel Charpentier a écrit :
>
> FWIW, on a Debian testing installation running on core I7 + 16 GB RAM, an 
> upgrade to 8.9.beta7 from a freshly reinstalled 8.9.beta6 gives three 
> failure that seem identical to those reported for 8.9.beta6:
>
> --
> sage -t --long --warn-long 157.5 src/sage/graphs/strongly_regular_db.pyx  
> # 4 doctests failed
> sage -t --long --warn-long 157.5 
> src/sage/rings/polynomial/polynomial_rational_flint.pyx  # 1 doctest failed
> sage -t --long --warn-long 157.5 
> src/sage/algebras/quantum_groups/quantum_group_gap.py  # Killed due to 
> segmentation fault
> --
>
> HTH,
>
> Le dimanche 18 août 2019 20:19:23 UTC+2, Volker Braun a écrit :
>>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html 
>>
>>
>> 7d561d89cf (tag: 8.9.beta7, trac/develop) Updated SageMath version to 
>> 8.9.beta7
>> 8c985712ae Trac #18267: libgap for PermutationGroup
>> 5b698dd631 Trac #28354: pexpect GAP interface: Handle errors when 
>> subprocess isn't wait()-ed by ptyprocess
>> 6fcbcf19be Trac #18312: Construction of a sparse matrix from sparse 
>> vectors does not exploit sparseness
>> d253db88ac Trac #28338: wrong AC_LINK_IFELSE call in spkg-configure
>> 2ea8fa1d96 Trac #27724: GAP Bernoulli function crashes on Cygwin with 
>> system GMP
>> dcaab57016 Trac #28331: AttributeError when computing manifold chart 
>> after computing its vector field module
>> d43cf1e44a Trac #28352: Fix depe

Re: [sage-release] Re: Sage 8.9.beta7 released

2019-08-23 Thread Sébastien Labbé


On Friday, August 23, 2019 at 3:12:54 PM UTC+2, Eric Gourgoulhon wrote:
>
> Hello Sebastien,
>
> This works for me on Ubuntu 18.04, with both Python 2 and 3 versions of 
> Sage 8.9.beta7.
> Maybe you should upgrade your SSL?
>

Ok I will check this out next week!
Sébastien
 

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Re: [sage-release] Re: Sage 8.9.beta7 released

2019-08-23 Thread Eric Gourgoulhon
Hello Sebastien,

This works for me on Ubuntu 18.04, with both Python 2 and 3 versions of 
Sage 8.9.beta7.
Maybe you should upgrade your SSL?

Best regards,

Eric. 

Le vendredi 23 août 2019 14:56:24 UTC+2, Sébastien Labbé a écrit :
>
>
> > I did my upgrade as usual, so I do not know where is the problem from. 
>> Am I alone to have this issue? Should I upgrade SSL or something? 
>>
>> This works for me on Debian buster, what OS are you on? And, is it 
>> python 2 or 3? 
>>
>>
> I am running Ubuntu 16.04 with this:
> ┌┐
> │ SageMath version 8.9.beta7, Release Date: 2019-08-18   │
> │ Using Python 2.7.15. Type "help()" for help.   │
> └┘
>
>

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Re: [sage-release] Re: Sage 8.9.beta7 released

2019-08-23 Thread Sébastien Labbé


> > I did my upgrade as usual, so I do not know where is the problem from. 
> Am I alone to have this issue? Should I upgrade SSL or something? 
>
> This works for me on Debian buster, what OS are you on? And, is it 
> python 2 or 3? 
>
>
I am running Ubuntu 16.04 with this:
┌┐
│ SageMath version 8.9.beta7, Release Date: 2019-08-18   │
│ Using Python 2.7.15. Type "help()" for help.   │
└┘

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Re: [sage-release] Re: Sage 8.9.beta7 released

2019-08-23 Thread Dima Pasechnik
On Fri, Aug 23, 2019 at 11:01 AM Sébastien Labbé  wrote:
>
> Bonjour!
>
> With the new version, I have problems fetching the internet:
>
> sage: oeis([3,7,15,1], max_results=4)
> Traceback (most recent call last)
> ...
> IOError:  failed (_ssl.c:726)>
> Error fetching 
> https://oeis.org/search?q=3%2C+7%2C+15%2C+1&start=0&fmt=text&n=4.
>
> I did my upgrade as usual, so I do not know where is the problem from. Am I 
> alone to have this issue? Should I upgrade SSL or something?

This works for me on Debian buster, what OS are you on? And, is it
python 2 or 3?


>
> Naturally, this leads to lots of failures while running optional and external 
> packages:
>
> Using 
> --optional=4ti2,awali,bliss,cbc,ccache,cmake,dot2tex,e_antic,external,glucose,latte_int,lidia,lrslib,memlimit,mpir,ninja_build,normaliz,notedown,openssl,pandoc_attributes,pycosat,pynormaliz,python2,qhull,rst2ipynb,sage,topcom
>
> --
> sage -t --long src/sage/combinat/words/paths.py  # 2 doctests failed
> sage -t --long src/sage/tests/cmdline.py  # 1 doctest failed
> sage -t --long src/sage/databases/oeis.py  # 147 doctests failed
> sage -t --long src/sage/graphs/generators/families.py  # 1 doctest failed
> sage -t --long src/sage/combinat/tutorial.py  # 2 doctests failed
> sage -t --long src/sage/symbolic/integration/external.py  # 14 doctests failed
> sage -t --long src/sage/matrix/matrix2.pyx  # 2 doctests failed
> sage -t --long src/sage/combinat/root_system/integrable_representations.py  # 
> 1 doctest failed
> sage -t --long src/sage/symbolic/integration/integral.py  # 1 doctest failed
> sage -t --long src/doc/en/thematic_tutorials/lie/integrable.rst  # 1 doctest 
> failed
> sage -t --long src/sage/databases/findstat.py  # 8 doctests failed
> sage -t --long src/sage/combinat/species/library.py  # 4 doctests failed
> sage -t --long src/sage/combinat/quickref.py  # 2 doctests failed
> sage -t --long src/sage/sat/solvers/dimacs.py  # 1 doctest failed
> sage -t --long src/sage/repl/load.py  # 1 doctest failed
> sage -t --long src/doc/en/developer/coding_basics.rst  # 1 doctest failed
> sage -t --long src/sage/combinat/designs/design_catalog.py  # 3 doctests 
> failed
> sage -t --long 
> src/doc/en/thematic_tutorials/explicit_methods_in_number_theory/modular_forms_and_hecke_operators.rst
>   # 1 doctest failed
> sage -t --long src/sage/combinat/integer_lists/invlex.pyx  # 1 doctest failed
> sage -t --long src/sage/combinat/designs/covering_design.py  # 2 doctests 
> failed
> sage -t --long src/sage/combinat/designs/ext_rep.py  # 1 doctest failed
> --
> External software detected for doctesting: 
> ffmpeg,graphviz,gurobi,imagemagick,internet,latex,pandoc
>
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[sage-release] Re: Sage 8.9.beta7 released

2019-08-23 Thread Sébastien Labbé
Bonjour!

With the new version, I have problems fetching the internet:

sage: oeis([3,7,15,1], max_results=4)
Traceback (most recent call last)
...
IOError: 
Error fetching 
https://oeis.org/search?q=3%2C+7%2C+15%2C+1&start=0&fmt=text&n=4.

I did my upgrade as usual, so I do not know where is the problem from. Am I 
alone to have this issue? Should I upgrade SSL or something?

Naturally, this leads to lots of failures while running optional and 
external packages:

Using 
--optional=4ti2,awali,bliss,cbc,ccache,cmake,dot2tex,e_antic,external,glucose,latte_int,lidia,lrslib,memlimit,mpir,ninja_build,normaliz,notedown,openssl,pandoc_attributes,pycosat,pynormaliz,python2,qhull,rst2ipynb,sage,topcom

--
sage -t --long src/sage/combinat/words/paths.py  # 2 doctests failed
sage -t --long src/sage/tests/cmdline.py  # 1 doctest failed
sage -t --long src/sage/databases/oeis.py  # 147 doctests failed
sage -t --long src/sage/graphs/generators/families.py  # 1 doctest failed
sage -t --long src/sage/combinat/tutorial.py  # 2 doctests failed
sage -t --long src/sage/symbolic/integration/external.py  # 14 doctests 
failed
sage -t --long src/sage/matrix/matrix2.pyx  # 2 doctests failed
sage -t --long src/sage/combinat/root_system/integrable_representations.py  
# 1 doctest failed
sage -t --long src/sage/symbolic/integration/integral.py  # 1 doctest failed
sage -t --long src/doc/en/thematic_tutorials/lie/integrable.rst  # 1 
doctest failed
sage -t --long src/sage/databases/findstat.py  # 8 doctests failed
sage -t --long src/sage/combinat/species/library.py  # 4 doctests failed
sage -t --long src/sage/combinat/quickref.py  # 2 doctests failed
sage -t --long src/sage/sat/solvers/dimacs.py  # 1 doctest failed
sage -t --long src/sage/repl/load.py  # 1 doctest failed
sage -t --long src/doc/en/developer/coding_basics.rst  # 1 doctest failed
sage -t --long src/sage/combinat/designs/design_catalog.py  # 3 doctests 
failed
sage -t --long 
src/doc/en/thematic_tutorials/explicit_methods_in_number_theory/modular_forms_and_hecke_operators.rst
  
# 1 doctest failed
sage -t --long src/sage/combinat/integer_lists/invlex.pyx  # 1 doctest 
failed
sage -t --long src/sage/combinat/designs/covering_design.py  # 2 doctests 
failed
sage -t --long src/sage/combinat/designs/ext_rep.py  # 1 doctest failed
--
External software detected for doctesting: 
ffmpeg,graphviz,gurobi,imagemagick,internet,latex,pandoc

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Re: [sage-release] Re: Sage 8.9.beta7 released

2019-08-22 Thread Dima Pasechnik
On Mon, Aug 19, 2019 at 3:40 PM Emmanuel Charpentier
 wrote:
>
> FWIW, on a Debian testing installation running on core I7 + 16 GB RAM, an 
> upgrade to 8.9.beta7 from a freshly reinstalled 8.9.beta6 gives three failure 
> that seem identical to those reported for 8.9.beta6:
>
> --
> sage -t --long --warn-long 157.5 src/sage/graphs/strongly_regular_db.pyx  # 4 
> doctests failed

I cannot reproduce this one on Debian stable (buster), everything works for me.

$ ./sage
┌┐
│ SageMath version 8.9.beta7, Release Date: 2019-08-18   │
│ Using Python 3.7.3. Type "help()" for help.│
└┘
┏┓
┃ Warning: this is a prerelease version, and it may be unstable. ┃
┗┛
sage:
Exiting Sage (CPU time 0m0.05s, Wall time 4m23.57s).
dimpase@penguin:~/sage$ ./sage -tp --long
src/sage/graphs/strongly_regular_db.pyx
Running doctests with ID 2019-08-22-23-07-31-38aea923.
Git branch: p3
Using --optional=build,dochtml,gap_packages,libsemigroups,memlimit,python2,sage
Doctesting 1 file using 4 threads.
sage -t --long --warn-long 75.7 src/sage/graphs/strongly_regular_db.pyx
[334 tests, 42.41 s]
--
All tests passed!




> sage -t --long --warn-long 157.5 
> src/sage/rings/polynomial/polynomial_rational_flint.pyx  # 1 doctest failed
> sage -t --long --warn-long 157.5 
> src/sage/algebras/quantum_groups/quantum_group_gap.py  # Killed due to 
> segmentation fault
> --
>
> HTH,
>
> Le dimanche 18 août 2019 20:19:23 UTC+2, Volker Braun a écrit :
>>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html
>>
>>
>> 7d561d89cf (tag: 8.9.beta7, trac/develop) Updated SageMath version to 
>> 8.9.beta7
>> 8c985712ae Trac #18267: libgap for PermutationGroup
>> 5b698dd631 Trac #28354: pexpect GAP interface: Handle errors when subprocess 
>> isn't wait()-ed by ptyprocess
>> 6fcbcf19be Trac #18312: Construction of a sparse matrix from sparse vectors 
>> does not exploit sparseness
>> d253db88ac Trac #28338: wrong AC_LINK_IFELSE call in spkg-configure
>> 2ea8fa1d96 Trac #27724: GAP Bernoulli function crashes on Cygwin with system 
>> GMP
>> dcaab57016 Trac #28331: AttributeError when computing manifold chart after 
>> computing its vector field module
>> d43cf1e44a Trac #28352: Fix dependencies on png.h, m4ri.h, m4rie.h
>> ee85c4bea5 Trac #28020: configure check for zlib and libzma can leave bogus 
>> compiler flags
>> 2654e1529d Trac #28341: Allow doc to build with SAGE_PARI_CFG undefined
>> 7a41f585a8 Trac #27864: spkg-configure.m4 for isl
>> 54be98be5d Trac #28328: Fix base ring conversion of non-associative unital 
>> algebras
>> b115ef9e63 Trac #28318: linbox for sparse integer matrix
>> b20a286c90 Trac #27081: Section for composite maps
>> 459699b47f Trac #28327: ModulesWithBasis random_element() uses coercion from 
>> base ring that might not exist
>> d4db3bd999 Trac #28323: expose is_comparability and is_permutation in graph
>> b656376291 Trac #28333: spkg-configure.m4 for eclib
>> ea6f35b74c Trac #28320: Further fixes for sage-env-less installs
>> ecdd4043be Trac #28242: spkg-configure.m4 for pari
>> 9a77264504 Trac #27859: Implementing the Yen's algorithm and its improved 
>> versions
>> 213fe0ba4d (tag: 8.9.beta6) Updated SageMath version to 8.9.beta6
>>
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[sage-release] Re: Sage 8.9.beta7 released

2019-08-21 Thread Simon King
Hi!

With 8.9.beta7 I get the following doctest failure with gap_packages:

$ ./sage -t --warn-long 51.5 src/sage/tests/gap_packages.py 
Running doctests with ID 2019-08-21-21-10-47-72e22124.
Git branch: develop
Using 
--optional=build,ccache,dochtml,frobby,gap_packages,gdb,gfortran,libsemigroups,meataxe,memlimit,mpir,p_group_cohomology,python2,sage
Doctesting 1 file.
sage -t --warn-long 51.5 src/sage/tests/gap_packages.py
**
File "src/sage/tests/gap_packages.py", line 8, in sage.tests.gap_packages
Failed example:
test_packages(pkgs, only_failures=True)# optional - gap_packages
Expected:
  Status   Package   GAP Output
++-++
Got:
#I  method installed for Matrix matches more than one declaration
  Status   Package   GAP Output
++-++
**
1 item had failures:
   1 of   5 in sage.tests.gap_packages
[11 tests, 1 failure, 5.77 s]
--
sage -t --warn-long 51.5 src/sage/tests/gap_packages.py  # 1 doctest failed
--
Total time for all tests: 5.8 seconds
cpu time: 4.2 seconds
cumulative wall time: 5.8 seconds

I wonder if (in addition to gap_packages) the error depends on meataxe,
as the error mentions "Matrix", and meataxe does provide a matrix
implemenation.

See https://trac.sagemath.org/ticket/28378

Best regards,
Simon

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[sage-release] Re: Sage 8.9.beta7 released

2019-08-19 Thread Emmanuel Charpentier
FWIW, on a Debian testing installation running on core I7 + 16 GB RAM, an 
upgrade to 8.9.beta7 from a freshly reinstalled 8.9.beta6 gives three 
failure that seem identical to those reported for 8.9.beta6:

--
sage -t --long --warn-long 157.5 src/sage/graphs/strongly_regular_db.pyx  # 
4 doctests failed
sage -t --long --warn-long 157.5 
src/sage/rings/polynomial/polynomial_rational_flint.pyx  # 1 doctest failed
sage -t --long --warn-long 157.5 
src/sage/algebras/quantum_groups/quantum_group_gap.py  # Killed due to 
segmentation fault
--

HTH,

Le dimanche 18 août 2019 20:19:23 UTC+2, Volker Braun a écrit :
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
>
> 7d561d89cf (tag: 8.9.beta7, trac/develop) Updated SageMath version to 
> 8.9.beta7
> 8c985712ae Trac #18267: libgap for PermutationGroup
> 5b698dd631 Trac #28354: pexpect GAP interface: Handle errors when 
> subprocess isn't wait()-ed by ptyprocess
> 6fcbcf19be Trac #18312: Construction of a sparse matrix from sparse 
> vectors does not exploit sparseness
> d253db88ac Trac #28338: wrong AC_LINK_IFELSE call in spkg-configure
> 2ea8fa1d96 Trac #27724: GAP Bernoulli function crashes on Cygwin with 
> system GMP
> dcaab57016 Trac #28331: AttributeError when computing manifold chart after 
> computing its vector field module
> d43cf1e44a Trac #28352: Fix dependencies on png.h, m4ri.h, m4rie.h
> ee85c4bea5 Trac #28020: configure check for zlib and libzma can leave 
> bogus compiler flags
> 2654e1529d Trac #28341: Allow doc to build with SAGE_PARI_CFG undefined
> 7a41f585a8 Trac #27864: spkg-configure.m4 for isl
> 54be98be5d Trac #28328: Fix base ring conversion of non-associative unital 
> algebras
> b115ef9e63 Trac #28318: linbox for sparse integer matrix
> b20a286c90 Trac #27081: Section for composite maps
> 459699b47f Trac #28327: ModulesWithBasis random_element() uses coercion 
> from base ring that might not exist
> d4db3bd999 Trac #28323: expose is_comparability and is_permutation in graph
> b656376291 Trac #28333: spkg-configure.m4 for eclib
> ea6f35b74c Trac #28320: Further fixes for sage-env-less installs
> ecdd4043be Trac #28242: spkg-configure.m4 for pari
> 9a77264504 Trac #27859: Implementing the Yen's algorithm and its improved 
> versions
> 213fe0ba4d (tag: 8.9.beta6) Updated SageMath version to 8.9.beta6
>
>

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