I didn't realize that about PeakView. So I am generating mgfs from a
single wiff 4 ways right now: dll script within Analyst, dll script
within Daemon, through PeakView (which took about two seconds), and
using Distiller (going on 3 hours right now). Then I will compare
them.
Thanks for all the id
Hi Ben,
I do not know how you look at your runs, but the PeakView software (I
use Version 1.1) that open the raw data wiff files can actually export
mgf format.
You need to open the IDA runs with the IDA explorer, select filtering
criteria you want (rt, spectra "quality") and then right click on th
ProteinPilot 3 doesn't support the 5200 or 5600 afaik so neither can
msconvert. We're helping to test a new api that will add that support but it
won't be available until the testing is over (probably another month or so).
In the meantime, try to get a copy of the AB's new beta standalone converter
Hi Ben, we have had some trouble with msconvert and TripleTOF. It seems
that the ProteinPilot dll calls that msconvert uses does not get the
precursor m/zs right. At least this happened at one time, I'm not certain
this is still a problem. However, AB is beta testing a converter tool that
will conv
