If you have the target/forward database, use the TPP's Pentunia interface
to generate the reverse decoy database. This will annotate the decoys
properly.
Or if you have perl installed, you can issue a command like this on your
decoy database:
perl -i -pe 's/^>/>REVERSED_/g;' decoy.fasta
Thanks a lot Jimmy. Is there a software tool or an online source that I can
use to add a prefix?
On Wednesday, January 22, 2014 1:20:39 AM UTC+10, Jimmy Eng wrote:
>
> The decoy tag/names need to be the prefix i.e.
>
> >REVERSED_sw|P84710|
>
> In this example, enter "REVERSED_" in the input text
The decoy tag/names need to be the prefix i.e.
>REVERSED_sw|P84710|
In this example, enter "REVERSED_" in the input text box. There's no way
to do it with your existing decoy notation format so you are unfortunately
going to need to change your decoy entry names.
On Sun, Jan 19, 2014 at 5:27 P
