Thanks a lot Jimmy. Is there a software tool or an online source that I can use to add a prefix?
On Wednesday, January 22, 2014 1:20:39 AM UTC+10, Jimmy Eng wrote: > > The decoy tag/names need to be the prefix i.e. > > >REVERSED_sw|P84710| > > In this example, enter "REVERSED_" in the input text box. There's no way > to do it with your existing decoy notation format so you are unfortunately > going to need to change your decoy entry names. > > > On Sun, Jan 19, 2014 at 5:27 PM, srihari sharma > <[email protected]<javascript:> > > wrote: > >> Hello, >> >> I have a question with respect to decoy. >> >> The fasta files in my decoy files start as shown below, >> >> >sw|P84710_REVERSED| >> >> and my fasta files looks like as shown below >> >> >sw|P84710| >> >> Now the question is, while running the PeptideProphet step how do I tag >> the reversed fasta file as decoy. In simple terms what tag do I need to add >> in the below box for the reversed fasta file shown above? >> >> ->Use decoy hits to pin down the negative distribution. Decoy Protein >> names begin with: (whitespace not allowed) >> >> Thanks a lot, >> Srihari Sharma >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to >> [email protected]<javascript:> >> . >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/groups/opt_out. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
