The decoy tag/names need to be the prefix i.e. >REVERSED_sw|P84710|
In this example, enter "REVERSED_" in the input text box. There's no way to do it with your existing decoy notation format so you are unfortunately going to need to change your decoy entry names. On Sun, Jan 19, 2014 at 5:27 PM, srihari sharma <sriharisharma...@gmail.com>wrote: > Hello, > > I have a question with respect to decoy. > > The fasta files in my decoy files start as shown below, > > >sw|P84710_REVERSED| > > and my fasta files looks like as shown below > > >sw|P84710| > > Now the question is, while running the PeptideProphet step how do I tag > the reversed fasta file as decoy. In simple terms what tag do I need to add > in the below box for the reversed fasta file shown above? > > ->Use decoy hits to pin down the negative distribution. Decoy Protein > names begin with: (whitespace not allowed) > > Thanks a lot, > Srihari Sharma > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
