Re: [spctools-discuss] Excluding every other scan? .raw -- .mzXML

2012-02-06 Thread Matt Chambers
Hi Chris, did you try the analyzer filter? Filtering one file on IT and the other on FT should do what you want with no hassle. -Matt On Feb 5, 2012 8:35 PM, Chris Rath chrisr...@gmail.com wrote: Hey everybody: I have a bunch of LTQ-FT data with alternating MS1 scans in the IT or FT cells. I

[spctools-discuss] Re: Attempt to access forbidden directory TPP-4.5.1 build 201201261618

2012-02-06 Thread sirlark
Hi Luis, Thanks for the heads up. It never occurred to me to look in cgi-bin for the config files, I was looking for them in etc. Either way, I have it working now, although for the sake of others with similar problems, I should point out that I needed to add an extra line, and modify your config

[spctools-discuss] Yeast ORF tutorial data uses a windows specific tandem.xml file

2012-02-06 Thread sirlark
For others struggling to get the tutorial to work on a Linux installation, note that the tandem.xml parameters file that you download for the tutorial data contains on line 6 note type=input label=list path, default parametersC:

Re: [spctools-discuss] Re: Attempt to access forbidden directory TPP-4.5.1 build 201201261618

2012-02-06 Thread Luis Mendoza
Hi James, I indeed forgot to include data_dir as part of my answer; glad that you found that and got it to work. And yes, Petunia resolves to absolute path names by default as an extra measure of security. Cheers, --Luis On Mon, Feb 6, 2012 at 7:07 AM, sirlark jgdom...@gmail.com wrote: Hi

Re: [spctools-discuss] Yeast ORF tutorial data uses a windows specific tandem.xml file

2012-02-06 Thread Luis Mendoza
Hi James, Thanks for the heads-up! The tutorial was written with a Windows installation in mind; I have added a note in the tutorial alerting users to modify file locations and parameters if they are using another system. Cheers, --Luis On Mon, Feb 6, 2012 at 7:26 AM, sirlark

[spctools-discuss] TPP 4.5.2 is now available

2012-02-06 Thread Joseph Slagel
Announcing the availability of Trans-Proteomic Pipeline (TPP) Rapture 4.5. 2 Now available is a minor update to the Trans-Proteomic Pipeline (TPP) software, release 4.5.2 (4.5 revision 2) which addresses a number of issues identified with version 4.5.1. All TPP users are *strongly *urged to