Hi Chris, did you try the analyzer filter? Filtering one file on IT and the other on FT should do what you want with no hassle.
-Matt On Feb 5, 2012 8:35 PM, "Chris Rath" <[email protected]> wrote: > Hey everybody: > > I have a bunch of LTQ-FT data with alternating MS1 scans in the IT or > FT cells. I would like to somehow separate the two kinds of data for > downstream processing. For example, have two .mzXML files with one for > even, and one for odd scans. > > This is trivial if one type of scan was ms1, and one was ms2, but kind > of hard if they are both ms1. I would be happy with this conversion in > Xcaliber, during conversion in proteowizard/TPP/ReadW, or after the > fact with a script. > > Any help would be greatly appreciated! > > Thanks, > > -Chris > > PS: Proteowizard will do this for arbitrary scan numbers (just enter a > list of every other scan), but you hit the fundamental character limit > for DOS after about 2000 scans. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
