Check out http://proteowizard.sourceforge.net/ - that's where the
msconvert utility is from.
On Sun, Nov 4, 2012 at 7:21 PM, Sam Islander sad...@gmail.com wrote:
I am having trouble compiling TPP in ubuntu 12.10. I think it's related to
boost libs. (version 1.49 is installed by default). I
A very big limitation of TPP at the moment. MaxQuant, unfortunately seems
to be the only option to process triply labelled data and maxquant is very
slow for big data sets. We often have to break up our analysis into 3 pair
wise comparison. it will be great to have an XPRESS version that can do
I have been doing similar work but with acetone instead of formaldehyde. I
am using Tandem as a search engine. In the tandem.params file for the
search, I specify static modifications for the light e.g.
42.0xx@[,42.0xx@K. Then specify the mass difference between the
heavy-light label as a
I have, apparently successfully compiled TPP 4.6.1 on Ubuntu server v12.04.
The hardware is a dual quad core MacPro.
However, I get the following error:
Formatting htmldoc.pdf...
*** buffer overflow detected ***: ../htmldoc/htmldoc terminated
=== Backtrace: =
You probably need to do 2 separate analyses for your M/L, and H/L ratio. As
far as I know, there is no way you can do triple-SILAC in TPP environment.
Maxquant is the only free tool you can try, since it runs in a desktop, it
is slow, but try the 64-bit version if possible.
Mascot also support
