, algorithmhrk-score/note
Then I would recommend lowering the spectrum, fragment monoisotopic
mass error values to something small and appropriate for hi-res data.
Cheers,
Mike
On 5/12/2013 11:45 PM, 2kl...@gmail.com javascript: wrote:
Hi All,
Is the high-resolution X!Tandem k-score
Hi,
I am using the TPP to analyse Q-Exactive data using X!tandem (k-score or
hrk-score) searches using similar settings that I used successfully with
Orbitrap data:
search against fwd+decoy database, running Xinteract with the following
options:accurate mass binning, *Do not* use the NTT
Sure. Let me know what you need and I will send you the data.
Best,
Oded
On Saturday, July 12, 2014 5:11:39 AM UTC+10, David Shteynberg wrote:
Hi Oded,
It is likely there is an issue with PTMProphet that doesn't recognize
the modifications in your dataset. If you can share a portion of
Hi,
I am having the same problem on a similar setup.
Thanks,
OK
On Tuesday, July 29, 2014 4:18:11 AM UTC+10, dsim...@vcu.edu wrote:
64-bit, Windows 7, by the way.
On Friday, July 25, 2014 3:46:57 PM UTC-4, dsim...@vcu.edu wrote:
I think I have found a bug in TPP v4.7 POLAR VORTEX rev 1,
Hi there,
I would like to convert PeptideProphet pep.XML (based on Comet Search) file
to mzIdentML using tpp2mzid.
The command seems to work and the mzID file is generated but it is missing
any fragmentation information.
I tried it on both Linux (Version 5.2.1) and Win (Version 5.2.0) and the
>
> Cheers,
>
> Mike
>
>
>
> *From:* spctools...@googlegroups.com <
> spctools...@googlegroups.com > *On Behalf Of *
> 2kl...@gmail.com
> *Sent:* Tuesday, February 04, 2020 1:28 PM
> *To:* spctools-discuss >
> *Subject:* [spctools-discuss] mzIDentML
&g
Hi all,
I am using the TPP v6.1.0 Parhelion, Build 202108271510 for analyzing
dimethylation following Comet (or MSFragger) search with the light label
set as fixed and the heavy mass difference as variable. Xpress settings
include mass tolerance of 20 ppmת a Minimum number of chromatogram
Dear Luis,
Apologies for the delay. How can I send you the file/s?
Thanks
On Wednesday, November 2, 2022 at 10:15:37 PM UTC+2 2kl...@gmail.com wrote:
> Hi Luis,
> Sure. I don't have internet access all the time in the coming week but
> will send you a download link when possible.
> I
.
On Sunday, October 30, 2022 at 1:41:41 AM UTC+3 Luis wrote:
> Hello,
> That is quite odd; Are you able to share a pepXML file so we can
> troubleshoot? You can contact me directly to arrange a file transfer.
> Thanks,
> --Luis
>
>
> On Tue, Oct 18, 2022 at 12:21 PM 2kl...@gma
Hi everybody,In reference to my report from 2022
(https://groups.google.com/g/spctools-discuss/c/BHES_8aAWnA/m/d11lND0nBwAJ),
we continue to observe discrepancies between the ratios displayed in the
pepXML and those obtained after using the XPressPeptideUpdateParser to
visualize the peaks.
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