I'm using the newest version of TPP, but encountered the same error when
using PeptideProphet. The file name I used looks like
I08-F4-SAX1.pep.xml
Any solution?
Thanks.
Elkan
在 2017年6月20日星期二 UTC+8上午1:28:34，David Shteynberg写道：
>
> Hello Ada,
>
> One immediate problem I notice is that your
Hello Elkan,
Although unlikely, the dashes in your filename could be the issue. In my
email on this thread I mentioned that only alphanumerics and underscores
"_" should be utilized. If that fails there is a problem with the pep.xml
file itself, that you would need to troubleshoot. How was the
Hi David,
All the xml files are generated by Comet search in command line. Ok, I will
revise the file names to meet the requirements and run PeptideProphet again.
Wish everything go right.
Thanks.
Regards,
Elkan
发自我的 iPad
> 在 2017年11月17日，22:47，David Shteynberg
Hello Alejandro,
We will add these columns to the PepXMLViewer for the next release; I can
let you know when we have a pre-release version if you would be interested
in testing it.
I am not sure why the ratios are not being correctly calculated; we will
have a look and try to fix as well for the
Hello Marine,
Unfortunately, you can only find these modifications by looking at the
source code of SpectraST, specifically, this file: (e.g. find "GlyGly")
https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/trans_proteomic_pipeline/src/Search/SpectraST/Peptide.cpp
Also, from a quick
