Hello Marine, Unfortunately, you can only find these modifications by looking at the source code of SpectraST, specifically, this file: (e.g. find "GlyGly")
https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/trans_proteomic_pipeline/src/Search/SpectraST/Peptide.cpp Also, from a quick reading of the code, it seems that these built-in mods take precedence over user-defined ones in case of a mass/name collision. Hope this helps, --Luis On Thu, Nov 16, 2017 at 1:39 AM, Marine <[email protected]> wrote: > Yes this is what I did and it worked with spectrast2tsv.py but I am > wondering if there would be an other way? (an option in spectrast or > something similar?). I have tested to put the ubiquitination in the > modification file (spectrast.usermods) during spectrast process but I > obtained the same tag (GlyGly). > And is it possible to find the list of all the modifications taken into > account by spectrast somewhere? > > Thank you very much! > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
